README.md

Topology-based Particle Tracking

The Topology-based Particle Tracking (T-PT) is a single particle tracking algorithm to track large particle displacements in images.

Important pages

• Download beta release version v0.1!
• Example data
• Questions/Issues
• Franck Lab

Running included example case

1. Make sure that the matlab code files are added to the path in Matlab.
2. Download and save the example volume data in the current directory.
3. Run the exampleRunFile.m file to track particles in images

Cite

If used, please cite: Patel, Mohak, Susan E. Leggett, Alexander K. Landauer, Ian Y. Wong, and Christian Franck. "Rapid, topology-based particle tracking for high-resolution measurements of large complex 3D motion fields." Scientific reports 8, no. 1 (2018): 5581.

@article{patel2018rapid,
  title={Rapid, topology-based particle tracking for high-resolution measurements of large complex 3D motion fields},
  author={Patel, Mohak and Leggett, Susan E and Landauer, Alexander K and Wong, Ian Y and Franck, Christian},
  journal={Scientific reports},
  volume={8},
  number={1},
  pages={5581},
  year={2018},
  publisher={Nature Publishing Group}
}

Contact and support

For questions, please first refer to Questions/Issues. Add a new question if similar issue hasn't been reported. We will provide assistance as promptly as possible. The authors' contact information can be found at Franck Lab.