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v1.4-beta.1

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@mpmeers mpmeers released this 07 Jul 17:26
· 7 commits to SEACRv1.4_dev since this release
v1.4-beta.1
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Learn about vigilant mode.

SEACR 1.4 development release contains the following changes:

  • Added dashed command line parameter support: inputs 1, 2, 3, 4, and 5 now correspond to -b, -c, -n, -m, and -o, respectively
  • Added a function to test a window of control scaling thresholds in order to render scaling more stable in "norm" mode
  • Added an optional input for a numeric peak extension factor (-e) during peak merging, where all peaks will be extended by e*(mean(peak length)) (default = 0.1)
  • Added an optional yes/no input to dictate whether peaks overlapping robust IgG peaks get filtered out or not (-r) (default = "yes")
  • Fixed a bug in which empty peak files failed due to a division by zero error before completion
  • Fixed a bug in which "NaN" is erroneously passed to quantile() in files with a low complexity of peaks
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