nextflow.config

manifest {
    mainScript = 'main.nf'
    defaultBranch = 'main'
    homePage = 'https://github.com/FredHutch/interop-nf'
    nextflowVersion = '20.10.0'
    name = 'InterOp QC'
}

report {
    enabled = true
    file = 'interop.nextflow.report.html'
}

profiles {
    standard {
        process {
            withLabel: 'io_limited' {
                cpus = { 1 }
                memory = { 2.GB }
                maxRetries = 1
            }
            withLabel: 'io_net' {
                cpus = { 1 }
                memory = { 2.GB }
                maxRetries = 1
            }
            withLabel: 'mem_medium' {
                cpus = { 1 }
                memory = { 4.GB }
                maxRetries = 1
            }
            withLabel: 'mem_veryhigh' {
                cpus = { 1 }
                memory = { 8.GB }
                maxRetries = 1
            }
        }
    }
    testing {
        process {
            executor = 'local'
            errorStrategy = 'terminate'
            withLabel: 'io_limited' {
                cpus = 1
                memory = 2.GB
            }
            withLabel: 'mem_medium' {
                cpus = 2
                memory = 4.GB
            }
            withLabel: 'mem_veryhigh' {
                cpus = 2
                memory = 4.GB
            }
        }
        docker {
            enabled = true
            temp = 'auto'
        }
    }
}