Fix code coverage output location (#4)

* change coverage output location

* update readme file

.github/workflows/tests.yml

@@ -23,12 +23,11 @@ jobs:
           pip install pytest
           pip install pytest-cov pylint
           python -m pytest tests --doctest-modules -o junit_family=xunit2 \
-            --junitxml=junit/test-results.xml \
-            --cov=bin tests/ --cov-report xml:junit/coverage.xml
+            --junitxml=test-results.xml \
+            --cov=bin tests/ --cov-report xml:coverage.xml
       - name: publish coverage
         uses: codecov/codecov-action@v1
         with:
-          directory: junit/
           files: coverage.xml
 
   integration:

README.md

@@ -1,6 +1,6 @@
 # InterOp QC Reporting - Nextflow
 
-Workflow used to generate QC metrics from the output of an Illumina sequencing run
+Workflow used to generate QC metrics from the output of an Illumina sequencing run.
 
 [![Run tests](https://github.com/FredHutch/interop-nf/actions/workflows/tests.yml/badge.svg)](https://github.com/FredHutch/interop-nf/actions/workflows/tests.yml)
 
@@ -24,7 +24,7 @@ The run folder must contain the `InterOp/` folder and the `RunInfo.xml` and `Run
 
 ## Workflow output
 
-View more [here](sample_output/README.md).
+[View more info here](sample_output/README.md).
 
 ## Other information