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requirements_full.txt
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requirements_full.txt
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#
# This file is autogenerated by pip-compile with Python 3.11
# by the following command:
#
# pip-compile --output-file=requirements_full.txt pyproject.toml
#
biopython==1.81
# via mdanalysis
certifi==2023.7.22
# via requests
charset-normalizer==3.2.0
# via requests
contourpy==1.1.0
# via matplotlib
cycler==0.11.0
# via matplotlib
fasteners==0.18
# via mdanalysis
fonttools==4.42.1
# via matplotlib
future==0.18.3
# via uncertainties
griddataformats==1.0.1
# via mdanalysis
idna==3.4
# via requests
imageio==2.31.3
# via scikit-image
joblib==1.3.2
# via
# mdanalysis
# pymatgen
kiwisolver==1.4.5
# via matplotlib
latexcodec==2.0.1
# via pybtex
lazy-loader==0.3
# via scikit-image
markdown-it-py==3.0.0
# via rich
matplotlib==3.7.3
# via
# GEMDAT (pyproject.toml)
# mdanalysis
# pymatgen
mdanalysis==2.6.1
# via GEMDAT (pyproject.toml)
mdurl==0.1.2
# via markdown-it-py
mmtf-python==1.1.3
# via mdanalysis
monty==2023.9.5
# via pymatgen
mpmath==1.3.0
# via sympy
mrcfile==1.4.3
# via griddataformats
msgpack==1.0.5
# via mmtf-python
networkx==3.1
# via
# mdanalysis
# pymatgen
# scikit-image
numpy==1.25.2
# via
# GEMDAT (pyproject.toml)
# biopython
# contourpy
# griddataformats
# imageio
# matplotlib
# mdanalysis
# mrcfile
# pandas
# pymatgen
# pywavelets
# scikit-image
# scipy
# spglib
# tifffile
packaging==23.1
# via
# matplotlib
# mdanalysis
# plotly
# scikit-image
palettable==3.3.3
# via pymatgen
pandas==2.1.0
# via pymatgen
pillow==10.0.0
# via
# imageio
# matplotlib
# scikit-image
plotly==5.16.1
# via pymatgen
pybtex==0.24.0
# via pymatgen
pygments==2.16.1
# via rich
pymatgen==2024.1.27
# via GEMDAT (pyproject.toml)
pyparsing==3.1.1
# via matplotlib
python-dateutil==2.8.2
# via
# matplotlib
# pandas
pytz==2023.3.post1
# via pandas
pywavelets==1.4.1
# via scikit-image
pyyaml==6.0.1
# via pybtex
requests==2.31.0
# via pymatgen
rich==13.5.2
# via GEMDAT (pyproject.toml)
ruamel-yaml==0.17.32
# via pymatgen
ruamel-yaml-clib==0.2.7
# via ruamel-yaml
scikit-image==0.21.0
# via GEMDAT (pyproject.toml)
scipy==1.11.2
# via
# GEMDAT (pyproject.toml)
# griddataformats
# mdanalysis
# pymatgen
# scikit-image
six==1.16.0
# via
# latexcodec
# pybtex
# python-dateutil
spglib==2.1.0
# via pymatgen
sympy==1.12
# via pymatgen
tabulate==0.9.0
# via pymatgen
tenacity==8.2.3
# via plotly
threadpoolctl==3.2.0
# via mdanalysis
tifffile==2023.8.30
# via scikit-image
tqdm==4.66.1
# via
# mdanalysis
# pymatgen
tzdata==2023.3
# via pandas
uncertainties==3.1.7
# via pymatgen
urllib3==2.0.4
# via requests