change ci from conda to mamba #104
Workflow file for this run
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| # This workflow will install Python dependencies using mamba, run tests and check pre-commit | |
| name: Python package | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.10","3.11"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set Swap Space | |
| uses: pierotofy/set-swap-space@master | |
| with: | |
| swap-size-gb: 10 | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| init-shell: bash | |
| generate-run-shell: true | |
| environment-name: testenv | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| - name: Install dependencies in mamba testenv | |
| run: | | |
| micromamba update -n testenv -f environment.yml | |
| # - name: Set up Python ${{ matrix.python-version }} | |
| # uses: actions/setup-python@v3 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # - name: Install dependencies | |
| # run: | | |
| # $CONDA/bin/conda env update --file environment.yml --name base | |
| # - name: Lint with flake8 | |
| # run: | | |
| # $CONDA/bin/conda install flake8 | |
| # # stop the build if there are Python syntax errors or undefined names | |
| # $CONDA/bin/flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| # $CONDA/bin/flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Run pytest in micromamba environment | |
| run: | | |
| micromamba install -n testenv pytest | |
| micromamba run -n testenv pytest --import-mode=importlib . | |
| # shell: micromamba-shell {0} | |
| # - name: Test with pytest | |
| # run: | | |
| # $CONDA/bin/conda install conda-build | |
| # $CONDA/bin/conda develop ./src | |
| # $CONDA/bin/conda install pytest | |
| # $CONDA/bin/pytest --import-mode=importlib . | |
| - name: pre-commit | |
| uses: pre-commit/action@v3.0.0 | |
| # eval "$(micromamba shell hook --shell bash)" | |
| # micromamba activate testenv |