default pipeline for data processing #140
Workflow file for this run
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| # This workflow will install Python dependencies using mamba, run tests and check pre-commit | |
| name: Python package | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set Swap Space | |
| uses: pierotofy/set-swap-space@master | |
| with: | |
| swap-size-gb: 10 | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: 'latest' | |
| init-shell: bash | |
| generate-run-shell: true | |
| environment-name: testenv | |
| environment-file: environment.yml | |
| - name: Run pytest in micromamba environment | |
| run: | | |
| micromamba install -n testenv pytest | |
| micromamba run -n testenv pytest --import-mode=importlib . | |
| - name: pre-commit | |
| uses: pre-commit/action@v3.0.0 |