-
Notifications
You must be signed in to change notification settings - Fork 219
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Add function to load Black Marble dataset (#3469)
Function to load the `@earth_night_` NASA Black Marble mosaic RGB images stored as GeoTIFF files. * Add entry for datasets.load_black_marble in doc/api/index.rst * Add unit tests for load_black_marble * Import rioxarray to register rio accessor * Add @earth_day_01d to pygmt/helpers/caching.py
- Loading branch information
Showing
7 changed files
with
171 additions
and
1 deletion.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,102 @@ | ||
""" | ||
Function to download the NASA Black Marble image datasets from the GMT data server, and | ||
load as :class:`xarray.DataArray`. | ||
The images are available in various resolutions. | ||
""" | ||
|
||
import contextlib | ||
from collections.abc import Sequence | ||
from typing import Literal | ||
|
||
import xarray as xr | ||
from pygmt.datasets.load_remote_dataset import _load_remote_dataset | ||
|
||
with contextlib.suppress(ImportError): | ||
# rioxarray is needed to register the rio accessor | ||
import rioxarray # noqa: F401 | ||
|
||
__doctest_skip__ = ["load_black_marble"] | ||
|
||
|
||
def load_black_marble( | ||
resolution: Literal[ | ||
"01d", | ||
"30m", | ||
"20m", | ||
"15m", | ||
"10m", | ||
"06m", | ||
"05m", | ||
"04m", | ||
"03m", | ||
"02m", | ||
"01m", | ||
"30s", | ||
] = "01d", | ||
region: Sequence[float] | str | None = None, | ||
) -> xr.DataArray: | ||
r""" | ||
Load NASA Black Marble images in various resolutions. | ||
.. figure:: https://www.generic-mapping-tools.org/remote-datasets/_images/GMT_earth_daynight.jpg | ||
:width: 80% | ||
:align: center | ||
Earth day/night dataset. | ||
The images are downloaded to a user data directory (usually | ||
``~/.gmt/server/earth/earth_night/``) the first time you invoke this function. | ||
Afterwards, it will load the image from the data directory. So you'll need an | ||
internet connection the first time around. | ||
These images can also be accessed by passing in the file name | ||
**@earth_night**\_\ *res* to any image processing function or plotting method. *res* | ||
is the image resolution (see below). | ||
Refer to :gmt-datasets:`earth-daynight.html` for more details about available | ||
datasets, including version information and references. | ||
Parameters | ||
---------- | ||
resolution | ||
The image resolution. The suffix ``d``, ``m``, and ``s`` stand for arc-degree, | ||
arc-minute, and arc-second. | ||
region | ||
The subregion of the image to load, in the form of a sequence [*xmin*, *xmax*, | ||
*ymin*, *ymax*]. | ||
Returns | ||
------- | ||
image | ||
The NASA Black Marble image. Coordinates are latitude and longitude in degrees. | ||
Note | ||
---- | ||
The registration and coordinate system type of the returned | ||
:class:`xarray.DataArray` image can be accessed via the GMT accessors (i.e., | ||
``image.gmt.registration`` and ``image.gmt.gtype`` respectively). However, these | ||
properties may be lost after specific image operations (such as slicing) and will | ||
need to be manually set before passing the image to any PyGMT data processing or | ||
plotting functions. Refer to :class:`pygmt.GMTDataArrayAccessor` for detailed | ||
explanations and workarounds. | ||
Examples | ||
-------- | ||
>>> from pygmt.datasets import load_black_marble | ||
>>> # load the default image (pixel-registered 1 arc-degree image) | ||
>>> image = load_black_marble() | ||
""" | ||
image = _load_remote_dataset( | ||
name="earth_night", | ||
prefix="earth_night", | ||
resolution=resolution, | ||
region=region, | ||
registration="pixel", | ||
) | ||
# If rioxarray is installed, set the coordinate reference system | ||
if hasattr(image, "rio"): | ||
image = image.rio.write_crs(input_crs="OGC:CRS84") | ||
return image |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,41 @@ | ||
""" | ||
Test basic functionality for loading Black Marble datasets. | ||
""" | ||
|
||
import numpy as np | ||
import numpy.testing as npt | ||
from pygmt.datasets import load_black_marble | ||
|
||
|
||
def test_black_marble_01d(): | ||
""" | ||
Test some properties of the Black Marble 01d data. | ||
""" | ||
data = load_black_marble(resolution="01d") | ||
assert data.name == "z" | ||
assert data.long_name == "black_marble" | ||
assert data.attrs["horizontal_datum"] == "WGS84" | ||
assert data.attrs["description"] == "NASA Night Images" | ||
assert data.shape == (3, 180, 360) | ||
assert data.dtype == "uint8" | ||
assert data.gmt.registration == 1 | ||
assert data.gmt.gtype == 1 | ||
npt.assert_allclose(data.y, np.arange(89.5, -90.5, -1)) | ||
npt.assert_allclose(data.x, np.arange(-179.5, 180.5, 1)) | ||
npt.assert_allclose(data.min(), 3, atol=1) | ||
npt.assert_allclose(data.max(), 174, atol=1) | ||
|
||
|
||
def test_black_marble_01d_with_region(): | ||
""" | ||
Test loading low-resolution Black Marble with 'region'. | ||
""" | ||
data = load_black_marble(resolution="01d", region=[-10, 10, -5, 5]) | ||
assert data.shape == (3, 10, 20) | ||
assert data.dtype == "uint8" | ||
assert data.gmt.registration == 1 | ||
assert data.gmt.gtype == 1 | ||
npt.assert_allclose(data.y, np.arange(4.5, -5.5, -1)) | ||
npt.assert_allclose(data.x, np.arange(-9.5, 10.5, 1)) | ||
npt.assert_allclose(data.min(), 3, atol=1) | ||
npt.assert_allclose(data.max(), 40, atol=1) |