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Add function to load Black Marble dataset #3469

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Sep 30, 2024
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1 change: 1 addition & 0 deletions doc/api/index.rst
Original file line number Diff line number Diff line change
Expand Up @@ -218,6 +218,7 @@ and store them in GMT's user data directory.
:toctree: generated

datasets.list_sample_data
datasets.load_black_marble
datasets.load_blue_marble
datasets.load_earth_age
datasets.load_earth_free_air_anomaly
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1 change: 1 addition & 0 deletions pygmt/datasets/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -10,6 +10,7 @@
from pygmt.datasets.earth_geoid import load_earth_geoid
from pygmt.datasets.earth_magnetic_anomaly import load_earth_magnetic_anomaly
from pygmt.datasets.earth_mask import load_earth_mask
from pygmt.datasets.earth_night import load_black_marble
from pygmt.datasets.earth_relief import load_earth_relief
from pygmt.datasets.earth_vertical_gravity_gradient import (
load_earth_vertical_gravity_gradient,
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5 changes: 5 additions & 0 deletions pygmt/datasets/earth_day.py
Original file line number Diff line number Diff line change
Expand Up @@ -5,12 +5,17 @@
The images are available in various resolutions.
"""

import contextlib
from collections.abc import Sequence
from typing import Literal

import xarray as xr
from pygmt.datasets.load_remote_dataset import _load_remote_dataset

with contextlib.suppress(ImportError):
# rioxarray is needed to register the rio accessor
import rioxarray # noqa: F401

__doctest_skip__ = ["load_blue_marble"]


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102 changes: 102 additions & 0 deletions pygmt/datasets/earth_night.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,102 @@
"""
Function to download the NASA Black Marble image datasets from the GMT data server, and
load as :class:`xarray.DataArray`.

The images are available in various resolutions.
"""

import contextlib
from collections.abc import Sequence
from typing import Literal

import xarray as xr
from pygmt.datasets.load_remote_dataset import _load_remote_dataset

with contextlib.suppress(ImportError):
# rioxarray is needed to register the rio accessor
import rioxarray # noqa: F401

__doctest_skip__ = ["load_black_marble"]


def load_black_marble(
resolution: Literal[
"01d",
"30m",
"20m",
"15m",
"10m",
"06m",
"05m",
"04m",
"03m",
"02m",
"01m",
"30s",
] = "01d",
region: Sequence[float] | str | None = None,
) -> xr.DataArray:
r"""
Load NASA Black Marble images in various resolutions.

.. figure:: https://www.generic-mapping-tools.org/remote-datasets/_images/GMT_earth_daynight.jpg
:width: 80%
:align: center

Earth day/night dataset.

The images are downloaded to a user data directory (usually
``~/.gmt/server/earth/earth_night/``) the first time you invoke this function.
Afterwards, it will load the image from the data directory. So you'll need an
internet connection the first time around.

These images can also be accessed by passing in the file name
**@earth_night**\_\ *res* to any image processing function or plotting method. *res*
is the image resolution (see below).

Refer to :gmt-datasets:`earth-daynight.html` for more details about available
datasets, including version information and references.

Parameters
----------
resolution
The image resolution. The suffix ``d``, ``m``, and ``s`` stand for arc-degree,
arc-minute, and arc-second.

region
The subregion of the image to load, in the form of a sequence [*xmin*, *xmax*,
*ymin*, *ymax*].

Returns
-------
image
The NASA Black Marble image. Coordinates are latitude and longitude in degrees.

Note
----
The registration and coordinate system type of the returned
:class:`xarray.DataArray` image can be accessed via the GMT accessors (i.e.,
``image.gmt.registration`` and ``image.gmt.gtype`` respectively). However, these
properties may be lost after specific image operations (such as slicing) and will
need to be manually set before passing the image to any PyGMT data processing or
plotting functions. Refer to :class:`pygmt.GMTDataArrayAccessor` for detailed
explanations and workarounds.

Examples
--------

>>> from pygmt.datasets import load_black_marble
>>> # load the default image (pixel-registered 1 arc-degree image)
>>> image = load_black_marble()
"""
image = _load_remote_dataset(
name="earth_night",
prefix="earth_night",
resolution=resolution,
region=region,
registration="pixel",
)
# If rioxarray is installed, set the coordinate reference system
if hasattr(image, "rio"):
image = image.rio.write_crs(input_crs="OGC:CRS84")

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Added line #L101 was not covered by tests
Comment on lines +99 to +101
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This line is not covered by a unit test. Should I add one, or we can ignore it?

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It should be covered when rioxarray is installed, right?

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Or do we have to import rioxarray to register the rio accessor

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The equivalent line in load_blue_marble is covered here in test_grdimage_image.py which has an import rioxarray at the top of the file:

xr_image = load_blue_marble(resolution="01d")

We don't test load_black_marble anywhere else except in test_datasets_earth_night.py, and since rioxarray is not imported in that file, this line isn't covered because there is no rio accessor.

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Maybe we can cover this line in the test_grdcut_image.py file at https://github.com/GenericMappingTools/pygmt/pull/3115/files#r1780370539?

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since rioxarray is not imported in that file, this line isn't covered because there is no rio accessor.

This is not ideal. So even if rioxarray is installed, the rio accessor may still not exist because users don't import the rioxarray package.

I think we should add the following lines to this file (and any other files that try to access the rio accessor):

with contextlib.suppress(ImportError):
# rioxarray is needed to register the rio accessor
import rioxarray # noqa: F401

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xref: #3323

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Ok, done at commit 66183ed. I've also applied this to pygmt/datasets/earth_day.py, hopefully you don't mind.

return image
21 changes: 20 additions & 1 deletion pygmt/datasets/load_remote_dataset.py
Original file line number Diff line number Diff line change
Expand Up @@ -214,6 +214,25 @@ class GMTRemoteDataset(NamedTuple):
"15s": Resolution("15s"),
},
),
"earth_night": GMTRemoteDataset(
description="NASA Night Images",
units=None,
extra_attributes={"long_name": "black_marble", "horizontal_datum": "WGS84"},
resolutions={
"01d": Resolution("01d", registrations=["pixel"]),
"30m": Resolution("30m", registrations=["pixel"]),
"20m": Resolution("20m", registrations=["pixel"]),
"15m": Resolution("15m", registrations=["pixel"]),
"10m": Resolution("10m", registrations=["pixel"]),
"06m": Resolution("06m", registrations=["pixel"]),
"05m": Resolution("05m", registrations=["pixel"]),
"04m": Resolution("04m", registrations=["pixel"]),
"03m": Resolution("03m", registrations=["pixel"]),
"02m": Resolution("02m", registrations=["pixel"]),
"01m": Resolution("01m", registrations=["pixel"]),
"30s": Resolution("30s", registrations=["pixel"]),
},
),
"earth_vgg": GMTRemoteDataset(
description="IGPP Earth vertical gravity gradient",
units="Eotvos",
Expand Down Expand Up @@ -428,7 +447,7 @@ def _load_remote_dataset(
f"'region' is required for {dataset.description} resolution '{resolution}'."
)

kind = "image" if name in {"earth_day"} else "grid"
kind = "image" if name in {"earth_day", "earth_night"} else "grid"
kwdict = {
"R": region, # region can be None
"T": "i" if kind == "image" else "g",
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41 changes: 41 additions & 0 deletions pygmt/tests/test_datasets_earth_night.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,41 @@
"""
Test basic functionality for loading Black Marble datasets.
"""

import numpy as np
import numpy.testing as npt
from pygmt.datasets import load_black_marble


def test_black_marble_01d():
"""
Test some properties of the Black Marble 01d data.
"""
data = load_black_marble(resolution="01d")
assert data.name == "z"
assert data.long_name == "black_marble"
assert data.attrs["horizontal_datum"] == "WGS84"
assert data.attrs["description"] == "NASA Night Images"
assert data.shape == (3, 180, 360)
assert data.dtype == "uint8"
assert data.gmt.registration == 1
assert data.gmt.gtype == 1
npt.assert_allclose(data.y, np.arange(89.5, -90.5, -1))
npt.assert_allclose(data.x, np.arange(-179.5, 180.5, 1))
npt.assert_allclose(data.min(), 3, atol=1)
npt.assert_allclose(data.max(), 174, atol=1)


def test_black_marble_01d_with_region():
"""
Test loading low-resolution Black Marble with 'region'.
"""
data = load_black_marble(resolution="01d", region=[-10, 10, -5, 5])
assert data.shape == (3, 10, 20)
assert data.dtype == "uint8"
assert data.gmt.registration == 1
assert data.gmt.gtype == 1
npt.assert_allclose(data.y, np.arange(4.5, -5.5, -1))
npt.assert_allclose(data.x, np.arange(-9.5, 10.5, 1))
npt.assert_allclose(data.min(), 3, atol=1)
npt.assert_allclose(data.max(), 40, atol=1)