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Water100 Project

Overview

This repository contains code for the Water100 Project, aimed at evaluating dose-response curves from the EPA's ECOTOX database. The code is written in R.

Installation

  1. Clone the repository: 
    git clone https://github.com/Geosyntec/water100.git

Folder Structure

  • /data
    Processed data from ECOTOX

  • /R
    .R and .Rmd scripts for analysis

  • /xlsx
    additional spreadsheets

  • /docx
    Report (in progress)

Ecotox Database

Due to its large size, the Ecotox database is not included in the GitHub repository. However, you can build it locally using the {ECOTOXr} package. The package documentation and source code are available at the ECOTOXr GitHub Repository.

To install the ECOTOXr package and build the database, you can follow these steps:

#install Ecotoxr
install.packages("ECOTOXr")

# Load library
library(ECOTOXr)

#Build the database locally
build_ecotox_db()

Usage

R/ecotox_eda_v6.Rmd

R/dose_response_example.R Provides an example of developing dose-response curves R/ecotox_eda_v6.Rmd ECOTOX Exploratory Data Analysis

Contributing

  1. Fork the repository.
  2. Create a new branch.
  3. Commit your changes.
  4. Create a pull request.

License

This project is licensed under the MIT License. See LICENSE.md for details.