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Releases: Gregor-Mendel-Institute/SNPmatch

Version 5.0.1

17 May 11:29
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Class function for HMM on genotyping an F2 cross with known parental genotypes. Fixed few bugs!

Version 5.0.0

23 Apr 11:07
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Package is now py3 compatible.

  1. Have adopted few functions from pyGWAS.
  2. Few updated function in parsers.py
  3. Updated HMM function to genotype cross. Changed the output file format to load into Rqtl.
  4. Conda package list update along with container.

Version 4.0.0

31 Jan 14:48
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Many changes.. 1. Can input gzipped vcf as input file. 2. functions for snp genotype 3. class function for snpmatch 4. docker container

Version 3.0.1

24 Jun 08:38
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Additional functions for non-thaliana genomes.

Version 2.5.0

05 Dec 09:50
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Implemented HMM for genotype cross.

Version 2.2.0

16 Aug 17:11
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Fixed problems during parsing chromosome names and few other bugs.

Version 2.0.0

26 Jan 15:15
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Few minor bugs. Added a new module parsers.

Version 1.9.2

01 Sep 12:29
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migrated to scikit-allel! better readme

Version 1.9.0

23 Aug 13:15
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v1.9.0

version up

Version 1.8.0

10 Feb 13:27
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minor changes, cleaned output filenames