[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

src/gwas/src/gwas/mem/arr.py

@@ -301,12 +301,12 @@ def resize(self, *shape: int) -> None:
         self.sw.allocations = allocations
 
     @overload
-    def triangularize(self, pivoting: Literal[True] = True) -> npt.NDArray[np.uint32]:
-        ...
+    def triangularize(
+        self, pivoting: Literal[True] = True
+    ) -> npt.NDArray[np.uint32]: ...
 
     @overload
-    def triangularize(self, pivoting: Literal[False]) -> None:
-        ...
+    def triangularize(self, pivoting: Literal[False]) -> None: ...
 
     def triangularize(self, pivoting: bool = True):
         """Triangularize to upper triangular matrix via the LAPACK routine GEQRF or

src/gwas/src/gwas/score/worker.py

@@ -320,9 +320,9 @@ def func(self) -> None:
                 two_dimensional_stat = stat.transpose().reshape(
                     (variant_count, 2 * phenotype_count)
                 )
-                self.stat_file_array[
-                    variant_slice, phenotype_slice
-                ] = two_dimensional_stat
+                self.stat_file_array[variant_slice, phenotype_slice] = (
+                    two_dimensional_stat
+                )
 
                 # Allow the calculation to continue
                 for i in range(job_count):

src/gwas/src/gwas/vcf/base.py

@@ -190,8 +190,7 @@ def save_to_cache(self, cache_path: Path) -> None:
     def read(
         self,
         dosages: npt.NDArray,
-    ) -> None:
-        ...
+    ) -> None: ...
 
     @staticmethod
     def cache_key(vcf_path: Path) -> str:

src/gwas/tests/conftest.py

@@ -90,9 +90,9 @@ def vcf_files_by_size_and_chromosome(
             base_path / dataset / "pytest" / str(sample_sizes[sample_size_label]),
         )
         for vcf_file in vcf_files:
-            vcf_files_by_size_and_chromosome[sample_size_label][
-                vcf_file.chromosome
-            ] = vcf_file
+            vcf_files_by_size_and_chromosome[sample_size_label][vcf_file.chromosome] = (
+                vcf_file
+            )
 
     return vcf_files_by_size_and_chromosome