Build site.

docs/about.html

@@ -343,7 +343,7 @@ <h1 class="title toc-ignore">About</h1>
 <p>
 <button type="button" class="btn btn-default btn-workflowr btn-workflowr-report" data-toggle="collapse" data-target="#workflowr-report">
 <span class="glyphicon glyphicon-list" aria-hidden="true"></span>
-workflowr <span class="glyphicon glyphicon-exclamation-sign text-danger"
+workflowr <span class="glyphicon glyphicon-ok text-success"
 aria-hidden="true"></span>
 </button>
 </p>
@@ -354,8 +354,8 @@ <h1 class="title toc-ignore">About</h1>
 </li>
 <li>
 <a data-toggle="tab" href="#checks"> Checks <span
-class="glyphicon glyphicon-exclamation-sign text-danger"
-aria-hidden="true"></span> </a>
+class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span>
+</a>
 </li>
 <li>
 <a data-toggle="tab" href="#versions">Past versions</a>
@@ -368,9 +368,9 @@ <h1 class="title toc-ignore">About</h1>
 </p>
 <p>
 <strong>Checks:</strong> <span
-class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span> 6
+class="glyphicon glyphicon-ok text-success" aria-hidden="true"></span> 7
 <span class="glyphicon glyphicon-exclamation-sign text-danger"
-aria-hidden="true"></span> 1
+aria-hidden="true"></span> 0
 </p>
 <p>
 <strong>Knit directory:</strong> <code>Cinquina_2024/</code> <span
@@ -393,21 +393,18 @@ <h1 class="title toc-ignore">About</h1>
 <div class="panel panel-default">
 <div class="panel-heading">
 <p class="panel-title">
-<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRMarkdownfilestronguncommittedchanges">
-<span class="glyphicon glyphicon-exclamation-sign text-danger"
-aria-hidden="true"></span> <strong>R Markdown file:</strong> uncommitted
-changes </a>
+<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRMarkdownfilestronguptodate">
+<span class="glyphicon glyphicon-ok text-success"
+aria-hidden="true"></span> <strong>R Markdown file:</strong> up-to-date
+</a>
 </p>
 </div>
-<div id="strongRMarkdownfilestronguncommittedchanges"
+<div id="strongRMarkdownfilestronguptodate"
 class="panel-collapse collapse">
 <div class="panel-body">
-<p>The R Markdown file has unstaged changes. To know which version of
-the R Markdown file created these results, you’ll want to first commit
-it to the Git repo. If you’re still working on the analysis, you can
-ignore this warning. When you’re finished, you can run
-<code>wflow_publish</code> to commit the R Markdown file and build the
-HTML.</p>
+<p>Great! Since the R Markdown file has been committed to the Git
+repository, you know the exact version of the code that produced these
+results.</p>
 </div>
 </div>
 </div>
@@ -498,15 +495,15 @@ <h1 class="title toc-ignore">About</h1>
 <div class="panel panel-default">
 <div class="panel-heading">
 <p class="panel-title">
-<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsgithubcomHarkanyLabCinquina2024tree5a9e7bace91eb867ebaf10de67db8e959846c7f3targetblank5a9e7baa">
+<a data-toggle="collapse" data-parent="#workflowr-checks" href="#strongRepositoryversionstrongahrefhttpsgithubcomHarkanyLabCinquina2024treede8b7b132f7b1c7adfbbff4bec5d9196411ccedftargetblankde8b7b1a">
 <span class="glyphicon glyphicon-ok text-success"
 aria-hidden="true"></span> <strong>Repository version:</strong>
-<a href="https://github.com/Harkany-Lab/Cinquina_2024/tree/5a9e7bace91eb867ebaf10de67db8e959846c7f3" target="_blank">5a9e7ba</a>
+<a href="https://github.com/Harkany-Lab/Cinquina_2024/tree/de8b7b132f7b1c7adfbbff4bec5d9196411ccedf" target="_blank">de8b7b1</a>
 </a>
 </p>
 </div>
 <div
-id="strongRepositoryversionstrongahrefhttpsgithubcomHarkanyLabCinquina2024tree5a9e7bace91eb867ebaf10de67db8e959846c7f3targetblank5a9e7baa"
+id="strongRepositoryversionstrongahrefhttpsgithubcomHarkanyLabCinquina2024treede8b7b132f7b1c7adfbbff4bec5d9196411ccedftargetblankde8b7b1a"
 class="panel-collapse collapse">
 <div class="panel-body">
 <p>
@@ -516,7 +513,7 @@ <h1 class="title toc-ignore">About</h1>
 </p>
 <p>
 The results in this page were generated with repository version
-<a href="https://github.com/Harkany-Lab/Cinquina_2024/tree/5a9e7bace91eb867ebaf10de67db8e959846c7f3" target="_blank">5a9e7ba</a>.
+<a href="https://github.com/Harkany-Lab/Cinquina_2024/tree/de8b7b132f7b1c7adfbbff4bec5d9196411ccedf" target="_blank">de8b7b1</a>.
 See the <em>Past versions</em> tab to see a history of the changes made
 to the R Markdown and HTML files.
 </p>
@@ -536,12 +533,6 @@ <h1 class="title toc-ignore">About</h1>
     Ignored:    data/SCP1290/
     Ignored:    data/azimuth_integrated.rds
 
-Unstaged changes:
-    Modified:   analysis/about.Rmd
-    Modified:   analysis/methods.Rmd
-    Modified:   output/methods/package-versions.json
-    Modified:   output/methods/packages.bib
-
 </code></pre>
 <p>
 Note that any generated files, e.g. HTML, png, CSS, etc., are not
@@ -586,6 +577,40 @@ <h1 class="title toc-ignore">About</h1>
 <tbody>
 <tr>
 <td>
+Rmd
+</td>
+<td>
+<a href="https://github.com/Harkany-Lab/Cinquina_2024/blob/de8b7b132f7b1c7adfbbff4bec5d9196411ccedf/analysis/about.Rmd" target="_blank">de8b7b1</a>
+</td>
+<td>
+Evgenii O. Tretiakov
+</td>
+<td>
+2024-07-25
+</td>
+<td>
+fix typos
+</td>
+</tr>
+<tr>
+<td>
+html
+</td>
+<td>
+<a href="https://rawcdn.githack.com/Harkany-Lab/Cinquina_2024/de8b7b132f7b1c7adfbbff4bec5d9196411ccedf/docs/about.html" target="_blank">de8b7b1</a>
+</td>
+<td>
+Evgenii O. Tretiakov
+</td>
+<td>
+2024-07-25
+</td>
+<td>
+fix typos
+</td>
+</tr>
+<tr>
+<td>
 html
 </td>
 <td>