The Pisces Galaxy (W4M 3.0) was custom-built with the code here and the command
docker build -t galaxy-w4m-3.0.x-cgh .
Note well that the Dockerfile has been changed to remove a comment character from galaxy.ini so that the following line is active.
object_store_config_file = config/object_store_config.xml
Theoretically, I should be able to set this via the environment variable
GALAXY_CONFIG_OBJECT_STORE_CONFIG_FILE
but I have been getting inconsistent results and made this change to avoid "one more moving part".
For further (albeit limited) information on configuring the object store, see the following:
- https://biostar.usegalaxy.org/p/18477/#18556
- https://github.com/galaxyproject/galaxy/blob/dev/config/object_store_conf.xml.sample
The Carina and Workshop Galaxies (W4M 3.0) were not custom-built; rather, they were stock-installs of W4M 3.0, specifically:
docker pull workflow4metabolomics/galaxy-workflow4metabolomics@sha256:a6ff8ecd87a90d7717e58edff355e504355085ed1f8195f722169f2fcb229360(Re)build W4M docker with tools customized for the Cohen Gardner Hegeman labs group
See https://github.com/HegemanLab/w4m-cgh-docker/releases/tag/fornax which documents how the 'Fornax' Galaxy (based on W4M 2.5.2) was built and could be reconstructed.