Scripts and entry points

cazy_webscraper entry points

Entry points are the commands that are provided with a program, and can be called from the command-line to perform specific functions.

Current entry points

cazy_webscraper - Scrapes CAZy and builds a new local CAZyme database or adds data to an existing CAZyme database

cazy_webscraper_get_gbk_sequences - Retrieves protein sequences from GenBank for CAZymes in a local CAZyme database

cazy_webscraper_get_pdb_structures - Retrieves structure files from PDB for CAZymes in a local CAZyme database

cazy_webscraper_extract_sequences - Extract protein sequences from a local CAZyme database and writes them out to FASTA

Potential future entry points

cazy_webscraper_get_unprt_sequences - Retrieves protein sequences from UniProt for CAZymes in a local CAZyme database

cazy_webscraper_get_unprt_annotations - Retrieve proteomic data from UniProt for CAZymes in a local CAZyme database