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Unset error exit around R pkg install
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The install script throws unexpected warnings about being unable to
install arrow, even though arrow is already installed by conda.
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TimothyWillard committed Oct 7, 2024
1 parent 075a41d commit e9344cb
Showing 1 changed file with 3 additions and 0 deletions.
3 changes: 3 additions & 0 deletions build/hpc_install.sh
Original file line number Diff line number Diff line change
Expand Up @@ -76,7 +76,10 @@ conda activate $USERDIR/flepimop-env
pip install --force-reinstall $FLEPI_PATH/flepimop/gempyor_pkg

# Install the local R packages
set +e
$FLEPI_PATH/build/setup.R $FLEPI_PATH
set -e

# Out source to flepi init for per run setup
source $FLEPI_PATH/build/flepi_init.sh $1
set +e

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