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Issues list

Write more thorough documentation for the ModelInfo class docstring Relating to in-code documentation. documentation Relating to ReadMEs / gitbook / vignettes / etc. gempyor Concerns the Python core. good first issue Good for newcomers.
#431 opened Dec 18, 2024 by emprzy
[Feature request]: automated SMH submission formatting for emcee enhancement Request for improvement or addition of new feature(s). gempyor Concerns the Python core. medium priority Medium priority. operations Refers to specific epi modeling objectives or scenario modeling goals. post-processing Concern the post-processing.
#430 opened Dec 17, 2024 by MacdonaldJoshuaCaleb Post-Processing And Scenario Analysis Tools
[Feature request]: Modular CLI Commands enhancement Request for improvement or addition of new feature(s). gempyor Concerns the Python core. medium priority Medium priority.
#427 opened Dec 16, 2024 by TimothyWillard
1
[Feature request]: Extract And Generalize Plugin System enhancement Request for improvement or addition of new feature(s). gempyor Concerns the Python core. medium priority Medium priority.
#421 opened Dec 9, 2024 by TimothyWillard Software Quality
[Feature request]: Add Detailed Instructions To The Output Of build/hpc_install_or_update.sh batch Relating to batch processing. documentation Relating to ReadMEs / gitbook / vignettes / etc. low priority Low priority. quick issue Short or easy fix.
#417 opened Dec 9, 2024 by TimothyWillard Installation/Usage Documentation And Ease
1
[Feature request]: Method For Directly Sampling From The Posterior Predictive From Output enhancement Request for improvement or addition of new feature(s). gempyor Concerns the Python core. medium priority Medium priority. post-processing Concern the post-processing.
#416 opened Dec 9, 2024 by TimothyWillard Post-Processing And Scenario Analysis Tools
1
[Feature request]: Add Output Plotting Options Of Panel Figure With Main Scenario Hub Targets enhancement Request for improvement or addition of new feature(s). gempyor Concerns the Python core. medium priority Medium priority. plotting Relating to plotting and/or visualizations. post-processing Concern the post-processing.
#415 opened Dec 9, 2024 by TimothyWillard Post-Processing And Scenario Analysis Tools
2
[Bug]: Inference CI Not Running When Gempyor CI Does bug Defects or errors in the code. high priority High priority. meta/workflow Relating to CI / issue templates / testing frameworks / etc. r-inference Relating to the R inference package.
#411 opened Dec 4, 2024 by TimothyWillard Software Quality
[Feature request]: Rewrite examples/simple_usa_statelevel/inference_benchmark.ipynb To Use Only Data In flepiMoP documentation Relating to ReadMEs / gitbook / vignettes / etc. gempyor Concerns the Python core. low priority Low priority. meta/workflow Relating to CI / issue templates / testing frameworks / etc.
#410 opened Dec 3, 2024 by TimothyWillard
3
[Feature request]: Refactor gempyor.NPI Into gempyor.modifiers docstring Relating to in-code documentation. documentation Relating to ReadMEs / gitbook / vignettes / etc. enhancement Request for improvement or addition of new feature(s). gempyor Concerns the Python core. medium priority Medium priority.
#409 opened Dec 3, 2024 by TimothyWillard Software Quality
1
[Bug]: Sampling parameters from distributions not working as intended bug Defects or errors in the code. gempyor Concerns the Python core. high priority High priority.
#406 opened Nov 26, 2024 by alsnhll
1
@TimothyWillard
4
[Feature request]: Create A gempyor Inference ABC enhancement Request for improvement or addition of new feature(s). gempyor Concerns the Python core. inference Concerns the parameter inference framework. medium priority Medium priority.
#402 opened Nov 18, 2024 by TimothyWillard Modular Inference And Comparisons
[Feature request]: User Local Install Documentation documentation Relating to ReadMEs / gitbook / vignettes / etc. high priority High priority. installation Relating to installation / upgrade / migration.
#401 opened Nov 15, 2024 by TimothyWillard Installation/Usage Documentation And Ease
@emprzy
1
[Feature request]: Add --extend, --shift Options To flepimop-calibrate enhancement Request for improvement or addition of new feature(s). gempyor Concerns the Python core. high priority High priority. inference Concerns the parameter inference framework.
#400 opened Nov 15, 2024 by TimothyWillard Incremental Calibration/Projections
1
[Feature request]: Add lintr Linting For R Packages enhancement Request for improvement or addition of new feature(s). low priority Low priority. meta/workflow Relating to CI / issue templates / testing frameworks / etc. r-flepicommon Relating to the flepicommon R package. r-flepiconfig Relating to the R configuration package. r-inference Relating to the R inference package.
#399 opened Nov 15, 2024 by TimothyWillard Software Quality
1
[Feature request]: Add pylint Or ruff Linting For gempyor enhancement Request for improvement or addition of new feature(s). gempyor Concerns the Python core. low priority Low priority. meta/workflow Relating to CI / issue templates / testing frameworks / etc.
#398 opened Nov 15, 2024 by TimothyWillard Software Quality
[Bug]: cyclic dependencies between model_info, seeding, and initial_conditions complicate type hinting dependency For issues with package dependencies. gempyor Concerns the Python core. high priority High priority.
#397 opened Nov 13, 2024 by pearsonca Software Quality
1
2
[Feature request]: consolidate "jobs" and "slots"/"chains" for simulation / projection batch Relating to batch processing. low priority Low priority.
#395 opened Nov 11, 2024 by pearsonca
@TimothyWillard
3
[Bug]: gempyor.shared_cli.parse_config_files Raises ValueError When Provided $CONFIG_PATH As Argument bug Defects or errors in the code. config Relating to configuration files or their framework. gempyor Concerns the Python core. medium priority Medium priority.
#389 opened Nov 7, 2024 by TimothyWillard
1
[Bug]: Parsing error in modifiers/inference parameter (checking in bounds?) bug Defects or errors in the code. gempyor Concerns the Python core. inference Concerns the parameter inference framework. low priority Low priority. quick issue Short or easy fix.
#380 opened Nov 1, 2024 by saraloo Stabilize Configuration/Inputs Format
1
@emprzy
14
[Feature request]: integrate calibrate action into flepimop CLI inference Concerns the parameter inference framework. medium priority Medium priority. operations Refers to specific epi modeling objectives or scenario modeling goals.
#378 opened Oct 31, 2024 by pearsonca Incremental Calibration/Projections
[Feature request]: support computed / derived parameters within configuration files config Relating to configuration files or their framework. gempyor Concerns the Python core. low priority Low priority.
#377 opened Oct 31, 2024 by pearsonca Stabilize Configuration/Inputs Format
[Bug]: Different behaviour when running one_simulation(), compared to gempyor-simulate gempyor Concerns the Python core. low priority Low priority.
#373 opened Oct 29, 2024 by saraloo
6
[Feature request]: multiple config files patching behavior enhancements config Relating to configuration files or their framework. enhancement Request for improvement or addition of new feature(s). medium priority Medium priority. meta/workflow Relating to CI / issue templates / testing frameworks / etc. operations Refers to specific epi modeling objectives or scenario modeling goals.
#371 opened Oct 29, 2024 by pearsonca
@pearsonca
[Feature request]: refactor flepimop_sample into flepimop/examples, provide example project auto copy-paste documentation Relating to ReadMEs / gitbook / vignettes / etc. low priority Low priority. meta/workflow Relating to CI / issue templates / testing frameworks / etc.
#368 opened Oct 29, 2024 by pearsonca Installation/Usage Documentation And Ease
ProTip! Exclude everything labeled bug with -label:bug.