.gitlab-ci.yml

image: ubuntu:20.04
workflow:
  rules:
    - if: $CI_COMMIT_REF_NAME == $CI_DEFAULT_BRANCH && $CI_PIPELINE_SOURCE == 'push'
before_script:
  # install ssh agent
  - 'which ssh-agent || ( apt-get update -y && apt-get install openssh-client git -y )'
  # configure ssh agent
  - eval $(ssh-agent -s)
  # set private key permissions
  - chmod 400 "$SSH_PRIVATE_KEY"
  # add key to the agent store
  - ssh-add "$SSH_PRIVATE_KEY"
  # configure known hosts
  - mkdir -p ~/.ssh
  - cp "$SSH_KNOWN_HOSTS" ~/.ssh/known_hosts
  - chmod 644 ~/.ssh/known_hosts
deploy_denali:
  stage: deploy
  script: |
    # fetch and checkout latest
    ssh -l "$SSH_USERNAME" "$SSH_HOSTNAME" "cd $MF6_PROJ_ROOT && git fetch $GIT_REMOTE && git checkout $GIT_BRANCH && git pull"
    echo "Updated repository $MF6_PROJ_ROOT"
    # submit a job to build mf6
    jobid=$(ssh -l "$SSH_USERNAME" "$SSH_HOSTNAME" "sbatch --account=$SLURM_ACCOUNT --reservation=$SLURM_RESERVATION --parsable -D $MF6_PROJ_ROOT/.hpc $MF6_PROJ_ROOT/$BUILD_SCRIPT" | tail -n 1)
    echo "Submitted build job $jobid"
    # submit a job to update the mf6 module
    jobid=$(ssh -l "$SSH_USERNAME" "$SSH_HOSTNAME" "sbatch --export=ALL,INTEL_VERSION=$INTEL_VERSION,MF6_PROJ_ROOT=$MF6_PROJ_ROOT,MODULES_PATH=$MODULES_PATH --account=$SLURM_ACCOUNT --reservation=$SLURM_RESERVATION --parsable -D $MF6_PROJ_ROOT/.hpc -d afterok:$jobid $MF6_PROJ_ROOT/$MODULE_SCRIPT" | tail -n 1)
    echo "Submitted module update job $jobid"
  environment: denali