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@article{augustin_impact_2020,
title = {The impact of wall thickness and curvature on wall stress in patient-specific electromechanical models of the left atrium},
volume = {19},
issn = {1617-7940},
number = {3},
journal = {Biomechanics and modeling in mechanobiology},
author = {Augustin, Christoph M and Fastl, Thomas E and Neic, Aurel and Bellini, Chiara and Whitaker, John and Rajani, Ronak and O’Neill, Mark D and Bishop, Martin J and Plank, Gernot and Niederer, Steven A},
year = {2020},
note = {Publisher: Springer},
pages = {1015--1034},
}
@article{rossi_muscle_2018,
title = {Muscle thickness and curvature influence atrial conduction velocities},
volume = {9},
issn = {1664-042X},
journal = {Frontiers in physiology},
author = {Rossi, Simone and Gaeta, Stephen and Griffith, Boyce E and Henriquez, Craig S},
year = {2018},
note = {Publisher: Frontiers},
pages = {1344},
}
@article{sanchez-quintana_left_2014,
title = {Left atrial anatomy relevant to catheter ablation},
volume = {2014},
issn = {2090-8016},
journal = {Cardiology research and practice},
author = {Sánchez-Quintana, Damián and López-Mínguez, José Ramón and Macías, Yolanda and Cabrera, José Angel and Saremi, Farhood},
year = {2014},
note = {Publisher: Hindawi},
}
@article{zhao_image-based_2012,
title = {Image-based model of atrial anatomy and electrical activation: a computational platform for investigating atrial arrhythmia},
volume = {32},
issn = {0278-0062},
number = {1},
journal = {IEEE transactions on medical imaging},
author = {Zhao, Jichao and Butters, Timothy D and Zhang, Henggui and LeGrice, Ian J and Sands, Gregory B and Smaill, Bruce H},
year = {2012},
note = {Publisher: IEEE},
pages = {18--27},
}
@article{gilbert_visualization_2012,
title = {Visualization and quantification of whole rat heart laminar structure using high-spatial resolution contrast-enhanced {MRI}},
volume = {302},
issn = {0363-6135},
number = {1},
journal = {American Journal of Physiology-Heart and Circulatory Physiology},
author = {Gilbert, Stephen H and Benoist, David and Benson, Alan P and White, ED and Tanner, Steven F and Holden, Arun V and Dobrzynski, Halina and Bernus, Olivier and Radjenovic, Aleksandra},
year = {2012},
note = {Publisher: American Physiological Society Bethesda, MD},
pages = {H287--H298},
}
@article{dunmorebuyze_threedimensional_2014,
title = {Three‐dimensional imaging of the mouse heart and vasculature using micro‐{CT} and whole‐body perfusion of iodine or phosphotungstic acid},
volume = {9},
issn = {1555-4309},
number = {5},
journal = {Contrast media \& molecular imaging},
author = {Dunmore‐Buyze, P Joy and Tate, Elsbeth and Xiang, Fu‐li and Detombe, Sarah A and Nong, Zengxuan and Pickering, J Geoffrey and Drangova, Maria},
year = {2014},
note = {Publisher: Wiley Online Library},
keywords = {micro-ct-image},
pages = {383--390},
}
@article{courtemanche_ionic_1998,
title = {Ionic mechanisms underlying human atrial action potential properties: insights from a mathematical model},
volume = {275},
issn = {1522-1539},
number = {1},
journal = {American Journal of Physiology-Heart and Circulatory Physiology},
author = {Courtemanche, Marc and Ramirez, Rafael J and Nattel, Stanley},
year = {1998},
note = {Publisher: American Physiological Society Bethesda, MD},
pages = {H301--H321},
}
@article{cherry_pulmonary_2007,
title = {Pulmonary vein reentry—properties and size matter: insights from a computational analysis},
volume = {4},
issn = {1547-5271},
number = {12},
journal = {Heart rhythm},
author = {Cherry, Elizabeth M and Ehrlich, Joachim R and Nattel, Stanley and Fenton, Flavio H},
year = {2007},
note = {Publisher: Elsevier},
pages = {1553--1562},
}
@article{fastl_personalized_2018,
title = {Personalized computational modeling of left atrial geometry and transmural myofiber architecture},
volume = {47},
issn = {1361-8415},
journal = {Medical image analysis},
author = {Fastl, Thomas E and Tobon-Gomez, Catalina and Crozier, Andrew and Whitaker, John and Rajani, Ronak and McCarthy, Karen P and Sanchez-Quintana, Damian and Ho, Siew Y and O’Neill, Mark D and Plank, Gernot},
year = {2018},
note = {Publisher: Elsevier},
keywords = {2D, rule-based},
pages = {180--190},
}
@article{silling_reformulation_2000,
title = {Reformulation of elasticity theory for discontinuities and long-range forces},
volume = {48},
issn = {0022-5096},
number = {1},
journal = {Journal of the Mechanics and Physics of Solids},
author = {Silling, Stewart A},
year = {2000},
note = {Publisher: Elsevier},
pages = {175--209},
}
@article{silling_meshfree_2005,
title = {A meshfree method based on the peridynamic model of solid mechanics},
volume = {83},
issn = {0045-7949},
number = {17-18},
journal = {Computers \& structures},
author = {Silling, Stewart A and Askari, Ebrahim},
year = {2005},
note = {Publisher: Elsevier},
pages = {1526--1535},
}
@article{silling_convergence_2008,
title = {Convergence of peridynamics to classical elasticity theory},
volume = {93},
issn = {0374-3535},
number = {1},
journal = {Journal of Elasticity},
author = {Silling, Stewart A and Lehoucq, Richard B},
year = {2008},
note = {Publisher: Springer},
pages = {13},
}
@article{behera_peridynamic_2020,
title = {Peridynamic correspondence model for finite elastic deformation and rupture in {Neo}-{Hookean} materials},
volume = {126},
issn = {0020-7462},
journal = {International Journal of Non-Linear Mechanics},
author = {Behera, Deepak and Roy, Pranesh and Madenci, Erdogan},
year = {2020},
note = {Publisher: Elsevier},
pages = {103564},
}
@article{garcia-villalba_demonstration_2021,
title = {Demonstration of {Patient}-specific simulations to assess left atrial appendage thrombogenesis risk},
volume = {12},
journal = {Frontiers in physiology},
author = {García-Villalba, Manuel and Rossini, Lorenzo and Gonzalo, Alejandro and Vigneault, Davis and Martinez-Legazpi, Pablo and Durán, Eduardo and Flores, Oscar and Bermejo, Javier and McVeigh, Elliot and Kahn, Andrew M},
year = {2021},
note = {Publisher: Frontiers Media SA},
}
@article{masci_impact_2019,
title = {The impact of left atrium appendage morphology on stroke risk assessment in atrial fibrillation: a computational fluid dynamics study},
volume = {9},
issn = {1664-042X},
journal = {Frontiers in physiology},
author = {Masci, Alessandro and Barone, Lorenzo and Dedè, Luca and Fedele, Marco and Tomasi, Corrado and Quarteroni, Alfio and Corsi, Cristiana},
year = {2019},
note = {Publisher: Frontiers},
pages = {1938},
}
@article{fatkin_relations_1994,
title = {Relations between left atrial appendage blood flow velocity, spontaneous echocardiographic contrast and thromboembolic risk in vivo},
volume = {23},
issn = {0735-1097},
number = {4},
journal = {Journal of the American College of Cardiology},
author = {Fatkin, Diane and Kelly, Raymond P and Feneley, Michael P},
year = {1994},
note = {Publisher: American College of Cardiology Foundation Washington, DC},
pages = {961--969},
}
@article{griffith_electrophysiology_2013,
title = {Electrophysiology},
volume = {66},
issn = {0010-3640},
number = {12},
journal = {Communications on Pure and Applied Mathematics},
author = {Griffith, Boyce E and Peskin, Charles S},
year = {2013},
note = {Publisher: Wiley Online Library},
pages = {1837--1913},
}
@article{rossi_incorporating_2017,
title = {Incorporating inductances in tissue-scale models of cardiac electrophysiology},
volume = {27},
issn = {1054-1500},
number = {9},
journal = {Chaos: An Interdisciplinary Journal of Nonlinear Science},
author = {Rossi, Simone and Griffith, Boyce E},
year = {2017},
note = {Publisher: AIP Publishing LLC},
pages = {093926},
}
@article{piersanti_modeling_2021,
title = {Modeling cardiac muscle fibers in ventricular and atrial electrophysiology simulations},
volume = {373},
issn = {0045-7825},
journal = {Computer Methods in Applied Mechanics and Engineering},
author = {Piersanti, Roberto and Africa, Pasquale C and Fedele, Marco and Vergara, Christian and Dedè, Luca and Corno, Antonio F and Quarteroni, Alfio},
year = {2021},
note = {Publisher: Elsevier},
pages = {113468},
}
@inproceedings{krueger_modeling_2011,
title = {Modeling atrial fiber orientation in patient-specific geometries: a semi-automatic rule-based approach},
publisher = {Springer},
author = {Krueger, Martin W and Schmidt, Viktor and Tobón, Catalina and Weber, Frank M and Lorenz, Cristian and Keller, David UJ and Barschdorf, Hans and Burdumy, Michael and Neher, Peter and Plank, Gernot},
year = {2011},
pages = {223--232},
}
@article{di_biase_left_2010,
title = {Left atrial appendage: an underrecognized trigger site of atrial fibrillation},
volume = {122},
issn = {0009-7322},
number = {2},
journal = {Circulation},
author = {Di Biase, Luigi and Burkhardt, J David and Mohanty, Prasant and Sanchez, Javier and Mohanty, Sanghamitra and Horton, Rodney and Gallinghouse, G Joseph and Bailey, Shane M and Zagrodzky, Jason D and Santangeli, Pasquale},
year = {2010},
note = {Publisher: Am Heart Assoc},
pages = {109--118},
}
@article{liang_phase_2017,
title = {Phase transitions during compression and decompression of clots from platelet-poor plasma, platelet-rich plasma and whole blood},
volume = {60},
issn = {1742-7061},
journal = {Acta biomaterialia},
author = {Liang, Xiaojun and Chernysh, Irina and Purohit, Prashant K and Weisel, John W},
year = {2017},
note = {Publisher: Elsevier},
keywords = {TO-READ, clot-modeling, compression-decompression},
pages = {275--290},
}
@article{wysokinski_atrial_2004,
title = {Atrial fibrillation and thrombosis: immunohistochemical differences between in situ and embolized thrombi},
volume = {2},
issn = {1538-7933},
number = {9},
journal = {Journal of Thrombosis and Haemostasis},
author = {Wysokinski, WE and Owen, WG and Fass, DN and Patrzalek, DD and Murphy, L and Mcbane, Robert D},
year = {2004},
note = {Publisher: Wiley Online Library},
keywords = {TO-READ},
pages = {1637--1644},
}
@article{koupenova_thrombosis_2017,
title = {Thrombosis and platelets: an update},
volume = {38},
issn = {0195-668X},
number = {11},
journal = {European heart journal},
author = {Koupenova, Milka and Kehrel, Beate E and Corkrey, Heather A and Freedman, Jane E},
year = {2017},
note = {Publisher: Oxford University Press},
keywords = {TO-READ},
pages = {785--791},
}
@article{lakhan_inflammatory_2009,
title = {Inflammatory mechanisms in ischemic stroke: therapeutic approaches},
volume = {7},
issn = {1479-5876},
number = {1},
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author = {Lakhan, Shaheen E and Kirchgessner, Annette and Hofer, Magdalena},
year = {2009},
note = {Publisher: BioMed Central},
pages = {1--11},
}
@article{du_is_2017,
title = {Is atrial fibrillation a preventable disease?},
volume = {69},
issn = {0735-1097},
number = {15},
journal = {Journal of the American College of Cardiology},
author = {Du, Xin and Dong, Jianzeng and Ma, Changsheng},
year = {2017},
note = {Publisher: Elsevier},
pages = {1968--1982},
}
@article{bukac_quantifying_2021,
title = {Quantifying the effects of intraluminal thrombi and their poroelastic properties on abdominal aortic aneurysms},
issn = {1432-0681},
journal = {Archive of Applied Mechanics},
author = {Bukač, Martina and Shadden, Shawn C},
year = {2021},
note = {Publisher: Springer},
pages = {1--12},
}
@article{walton_elevated_2017,
title = {Elevated hematocrit enhances platelet accumulation following vascular injury},
volume = {129},
issn = {0006-4971},
number = {18},
journal = {Blood, The Journal of the American Society of Hematology},
author = {Walton, Bethany L and Lehmann, Marcus and Skorczewski, Tyler and Holle, Lori A and Beckman, Joan D and Cribb, Jeremy A and Mooberry, Micah J and Wufsus, Adam R and Cooley, Brian C and Homeister, Jonathan W},
year = {2017},
note = {Publisher: American Society of Hematology Washington, DC},
pages = {2537--2546},
}
@article{bannish_molecular_2017,
title = {Molecular and physical mechanisms of fibrinolysis and thrombolysis from mathematical modeling and experiments},
volume = {7},
issn = {2045-2322},
number = {1},
journal = {Scientific reports},
author = {Bannish, Brittany E and Chernysh, Irina N and Keener, James P and Fogelson, Aaron L and Weisel, John W},
year = {2017},
note = {Publisher: Nature Publishing Group},
pages = {1--11},
}
@article{leiderman_synergy_2016,
title = {Synergy between tissue factor and exogenous factor {XIa} in initiating coagulation},
volume = {36},
issn = {1079-5642},
number = {12},
journal = {Arteriosclerosis, thrombosis, and vascular biology},
author = {Leiderman, Karin and Chang, William C and Ovanesov, Mikhail and Fogelson, Aaron L},
year = {2016},
note = {Publisher: Am Heart Assoc},
pages = {2334--2345},
}
@article{fastl_personalized_2018-1,
title = {Personalized computational modeling of left atrial geometry and transmural myofiber architecture},
volume = {47},
issn = {1361-8415},
journal = {Medical image analysis},
author = {Fastl, Thomas E and Tobon-Gomez, Catalina and Crozier, Andrew and Whitaker, John and Rajani, Ronak and McCarthy, Karen P and Sanchez-Quintana, Damian and Ho, Siew Y and O’Neill, Mark D and Plank, Gernot},
year = {2018},
note = {Publisher: Elsevier},
pages = {180--190},
}
@article{roney_universal_2019,
title = {Universal atrial coordinates applied to visualisation, registration and construction of patient specific meshes},
volume = {55},
issn = {1361-8415},
journal = {Medical image analysis},
author = {Roney, Caroline H and Pashaei, Ali and Meo, Marianna and Dubois, Rémi and Boyle, Patrick M and Trayanova, Natalia A and Cochet, Hubert and Niederer, Steven A and Vigmond, Edward J},
year = {2019},
note = {Publisher: Elsevier},
pages = {65--75},
}
@article{roney_constructing_2021,
title = {Constructing a human atrial fibre atlas},
volume = {49},
issn = {0090-6964},
journal = {Annals of biomedical engineering},
author = {Roney, Caroline H and Bendikas, Rokas and Pashakhanloo, Farhad and Corrado, Cesare and Vigmond, Edward J and McVeigh, Elliot R and Trayanova, Natalia A and Niederer, Steven A},
year = {2021},
note = {Publisher: Springer},
pages = {233--250},
}
@misc{griffith_ibamr_2014,
title = {{IBAMR}: an adaptive and distributed-memory parallel implementation of the immersed boundary (ib) method},
url = {https://github.com/IBAMR/IBAMR},
author = {Griffith, Boyce E},
year = {2014},
}
@article{shi_effects_2016,
title = {Effects of different shear rates on the attachment and detachment of platelet thrombi},
volume = {13},
issn = {1791-2997},
number = {3},
journal = {Molecular medicine reports},
author = {Shi, Xiaofeng and Yang, Jichun and Huang, Jiansong and Long, Zhangbiao and Ruan, Zheng and Xiao, Bing and Xi, Xiaodong},
year = {2016},
note = {Publisher: Spandidos Publications},
keywords = {TO-READ},
pages = {2447--2456},
}
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number = {6},
journal = {Journal of the American College of Cardiology},
author = {Di Biase, Luigi and Santangeli, Pasquale and Anselmino, Matteo and Mohanty, Prasant and Salvetti, Ilaria and Gili, Sebastiano and Horton, Rodney and Sanchez, Javier E and Bai, Rong and Mohanty, Sanghamitra},