From 083e9e4804f796ebae7b69f27c503de5a21075d5 Mon Sep 17 00:00:00 2001 From: Daniel Weindl Date: Mon, 16 Sep 2024 18:50:31 +0200 Subject: [PATCH] Skip unsupported benchmark models --- .../tests/benchmark-models/test_petab_benchmark.py | 10 +++++++--- 1 file changed, 7 insertions(+), 3 deletions(-) diff --git a/deps/AMICI/tests/benchmark-models/test_petab_benchmark.py b/deps/AMICI/tests/benchmark-models/test_petab_benchmark.py index 0b3c6d80..2a4e295f 100755 --- a/deps/AMICI/tests/benchmark-models/test_petab_benchmark.py +++ b/deps/AMICI/tests/benchmark-models/test_petab_benchmark.py @@ -31,15 +31,19 @@ if petab_path.is_dir() if str(petab_path.stem) not in ( + # excluded due to unsupported priors + "Schwen_PONE2014", + "Zhao_QuantBiol2020", # excluded due to excessive runtime - "Bachmann_MSB2011", + "Bachmann_MSB2011", # prior "Chen_MSB2009", "Froehlich_CellSystems2018", - "Raimundez_PCB2020", + "Raimundez_PCB2020", # prior "Lucarelli_CellSystems2018", - "Isensee_JCB2018", + "Isensee_JCB2018", # prior "Beer_MolBioSystems2014", "Alkan_SciSignal2018", + "Lang_PLOSComputBiol2024", # excluded due to excessive numerical failures "Crauste_CellSystems2017", "Fujita_SciSignal2010",