nextflow_schema.json

{
    "$schema": "http://json-schema.org/draft-07/schema",
    "$id": "https://raw.githubusercontent.com/IPK-BIT/divassociate/main/nextflow_schema.json",
    "title": "Nextflow pipeline parameters",
    "description": "This pipeline uses Nextflow and processes some kind of data. The JSON Schema was built using the nf-core pipeline schema builder.",
    "type": "object",
    "definitions": {
        "input_output_parameters": {
            "title": "Input/ Output Parameters",
            "type": "object",
            "description": "Parameters to defined the input and output",
            "default": "",
            "properties": {
                "samples": {
                    "type": "string",
                    "description": "Path to CSV file containing the germplasm IDs",
                    "format": "file-path",
                    "mimetype": "text/csv",
                    "fa_icon": "fas fa-file-alt"
                },
                "vcf": {
                    "type": "string",
                    "format": "file-path",
                    "description": "Path to the VCF file used for the association test.",
                    "fa_icon": "fas fa-file",
                    "mimetype": "application/vcf"
                },
                "observations": {
                    "type": "string",
                    "description": "Path to CSV file containing the sample ID and the variable observations",
                    "format": "file-path",
                    "mimetype": "text/csv",
                    "fa_icon": "fas fa-file-alt"
                },
                "outdir": {
                    "type": "string",
                    "format": "directory-path",
                    "description": "Path to an output directory where the results are written.",
                    "fa_icon": "fas fa-folder-open"
                }
            },
            "required": [
                "outdir",
                "samples",
                "vcf",
                "observations"
            ]
        }
    },
    "allOf": [
        {
            "$ref": "#/definitions/input_output_parameters"
        }
    ]
}