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108 Open 66 Closed
108 Open 66 Closed
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Issues list

Persistent Warning Regarding INFO/IMPORT_FAIL in VCF Header
#192 opened Oct 2, 2024 by Iredcg
1
Using --usefiltered-truth results in incorrect FP calls for filtered variants in the truth (xcmp)
#191 opened Jul 24, 2024 by melferink
Make a new pre-built docker image?
#190 opened Jul 22, 2024 by Luobiny
While using hap.py, there is a problem:
#189 opened Jul 13, 2024 by pioneer-pi
Can't find reference
#188 opened May 30, 2024 by ktruve
1
How is the false positive rate calculated in som.py stats?
#187 opened Apr 25, 2024 by Krannich479
Docker build failed
#186 opened Apr 22, 2024 by MAlwaz
1
[E::bgzf_uncompress] inflate failed: invalid distance too far back
#185 opened Dec 13, 2023 by liukeweiaway
1
Incorrect number of FORMAT/AD values on scmp-distance engine
#181 opened Sep 5, 2023 by jerrywongzy
Docker fails to build for both bases
#180 opened Sep 1, 2023 by rickymagner
ROC and PR curve
#179 opened Aug 30, 2023 by ESDeutekom
2
Trying to print sequence when we mean contig name
#176 opened Apr 19, 2023 by adamnovak
VCF format issues with --write-vcf, - FORMAT field inconsistencies
#175 opened Apr 18, 2023 by insilicool
1
Integrating vcfdist as a comparison engine into hap.py
#173 opened Apr 5, 2023 by TimD1
Error running BCFTOOLS :Argument list too long
#172 opened Mar 16, 2023 by zhaolx01
Parsing results VCF gives different counts of TRUTH FN than summary
#170 opened Jan 24, 2023 by BrianLohman
1
pre.py -> vcfcheck fails due to call with invalid genotype (non-existent allele)
#169 opened Dec 4, 2022 by robertzeibich
Confused with the interpretation when having TRUTH.FN and QUERY.FP
#168 opened Nov 10, 2022 by Manuel-DominguezCBG
2
running into build error with CMake
#166 opened Nov 3, 2022 by Overcraft90
3
TRUTH.TOTAL differs despite having used the same TRUTH SET
#165 opened Oct 20, 2022 by robertzeibich
3
Hap.py not working with singularity
#164 opened Aug 25, 2022 by NoamYakar23
1
PreProcessing creates un-ordered VCF
#163 opened Aug 15, 2022 by MattWellie
1
output_vcf
#162 opened Aug 1, 2022 by Shreya-droid
1
Don't find the reference
#161 opened Jul 27, 2022 by kangxiongbin
1
problems about default and customized ref.fasta in variant normalisation process
#159 opened May 23, 2022 by YuanfengZhang
1
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