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Finished conversion of .bat launchers, removed test scripts, removed …
…unnecessary title files, simplified scenario launcher config files
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,11 +1,4 @@ | ||
| { | ||
| "plotAllCharts": { | ||
| "script": "plotAllCharts.py", | ||
| "title": "Density Scaling", | ||
| "report": "output/InsetChart.json" | ||
| }, | ||
| "plotSIRChannels": { | ||
| "commandline": "python ../../../bin/plotSIRChannels.py -c I -t \"Density Scaling\" output/InsetChart.json", | ||
| "script": "plotSIRChannels.py" | ||
| } | ||
| "plotAllCharts": "--title=\"Density Scaling\" output/InsetChart.json", | ||
| "plotSIRChannels": "-c I -t \"Density Scaling\" output/InsetChart.json" | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,9 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../scripts/helpers.ps1 | ||
| . ../../../../scripts/helpers.ps1 | ||
|
|
||
| $sc = (Get-Content -Path ".scenario" | ConvertFrom-Json -AsHashtable) | ||
| $key = (Split-Path $MyInvocation.MyCommand.Name -LeafBase) | ||
| $config = $sc[$key] | ||
| $pyscript = (Join-Path "$BIN_ROOT" $config.script) | ||
| & python $pyscript --title="$($config.title)" $config.report | ||
| Push-Location -Path $PSScriptRoot | ||
| $name = (PSScriptBaseName) | ||
| $script = $PLOT[$name] | ||
| & python $script --title="Density Scaling" output/InsetChart.json |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../../scripts/helpers.ps1 | ||
|
|
||
| Push-Location -Path $PSScriptRoot | ||
| $name = (PSScriptBaseName) | ||
| $script = $PLOT[$name] | ||
| & python $script -c I -t "Density Scaling" output/InsetChart.json |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
| & ../../../bin/Eradication -C config.json -I ../../../Demographics_Files -D ../../../dll -O output | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../scripts/helpers.ps1 | ||
|
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||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| & $EMOD --config="config.json" --input-path="$INPUT_ROOT" --dll-path="$DLL_ROOT" --output-path="output" | ||
| Pop-Location |
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11 changes: 2 additions & 9 deletions
11
Scenarios/Generic/HINT_AgeAndAccess/A_BaselineOutbreak/.scenario
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,11 +1,4 @@ | ||
| { | ||
| "plotPropertyReport": { | ||
| "commandline": "python ../../../../bin/plotPropertyReport.py output/PropertyReport.json", | ||
| "script": "plotPropertyReport.py" | ||
| }, | ||
| "plotAllCharts": { | ||
| "script": "plotAllCharts.py", | ||
| "title": "HINT - Baseline Outbreak", | ||
| "report": "output/InsetChart.json" | ||
| } | ||
| "plotAllCharts": "--title=\"HINT - Baseline Outbreak\" output/InsetChart.json", | ||
| "plotPropertyReport": "output/PropertyReport.json" | ||
| } |
11 changes: 5 additions & 6 deletions
11
Scenarios/Generic/HINT_AgeAndAccess/A_BaselineOutbreak/plotAllCharts.ps1
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,9 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../../scripts/helpers.ps1 | ||
| . ../../../../../scripts/helpers.ps1 | ||
|
|
||
| $sc = (Get-Content -Path ".scenario" | ConvertFrom-Json -AsHashtable) | ||
| $key = (Split-Path $MyInvocation.MyCommand.Name -LeafBase) | ||
| $config = $sc[$key] | ||
| $pyscript = (Join-Path "$BIN_ROOT" $config.script) | ||
| & python $pyscript --title="$($config.title)" $config.report | ||
| Push-Location -Path $PSScriptRoot | ||
| $name = (PSScriptBaseName) | ||
| $script = $PLOT[$name] | ||
| & python $script --title="HINT - Baseline Outbreak" output/InsetChart.json |
5 changes: 0 additions & 5 deletions
5
Scenarios/Generic/HINT_AgeAndAccess/A_BaselineOutbreak/plotPropertyReport.bat
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8 changes: 8 additions & 0 deletions
8
Scenarios/Generic/HINT_AgeAndAccess/A_BaselineOutbreak/plotPropertyReport.ps1
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../../../scripts/helpers.ps1 | ||
|
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||
| Push-Location -Path $PSScriptRoot | ||
| $name = (PSScriptBaseName) | ||
| $script = $PLOT[$name] | ||
| & python $script output/PropertyReport.json |
9 changes: 7 additions & 2 deletions
9
Scenarios/Generic/HINT_AgeAndAccess/A_BaselineOutbreak/runEmod.ps1
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
| & ../../../../bin/Eradication -C config.json -I ../../../../Demographics_Files -D ../../../../dll -O output | ||
| Push-Location -Path $PSScriptRoot | ||
|
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| . ../../../../scripts/helpers.ps1 | ||
|
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| Push-Location -Path $PSScriptRoot | ||
|
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||
| & $EMOD --config="config.json" --input-path="$INPUT_ROOT" --dll-path="$DLL_ROOT" --output-path="output" | ||
| Pop-Location |
1 change: 0 additions & 1 deletion
1
Scenarios/Generic/HINT_AgeAndAccess/A_BaselineOutbreak/title.txt
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11 changes: 2 additions & 9 deletions
11
Scenarios/Generic/HINT_AgeAndAccess/B_AgeTargetedVaccine/.scenario
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,11 +1,4 @@ | ||
| { | ||
| "plotPropertyReport": { | ||
| "commandline": "python ../../../../bin/plotPropertyReport.py output/PropertyReport.json", | ||
| "script": "plotPropertyReport.py" | ||
| }, | ||
| "plotAllCharts": { | ||
| "script": "plotAllCharts.py", | ||
| "title": "HINT - Age-Targeted Vaccine", | ||
| "report": "output/InsetChart.json" | ||
| } | ||
| "plotAllCharts": "--title=\"HINT - Age-Targeted Vaccine\" output/InsetChart.json", | ||
| "plotPropertyReport": "output/PropertyReport.json" | ||
| } |
11 changes: 5 additions & 6 deletions
11
Scenarios/Generic/HINT_AgeAndAccess/B_AgeTargetedVaccine/plotAllCharts.ps1
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,9 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../../scripts/helpers.ps1 | ||
| . ../../../../../scripts/helpers.ps1 | ||
|
|
||
| $sc = (Get-Content -Path ".scenario" | ConvertFrom-Json -AsHashtable) | ||
| $key = (Split-Path $MyInvocation.MyCommand.Name -LeafBase) | ||
| $config = $sc[$key] | ||
| $pyscript = (Join-Path "$BIN_ROOT" $config.script) | ||
| & python $pyscript --title="$($config.title)" $config.report | ||
| Push-Location -Path $PSScriptRoot | ||
| $name = (PSScriptBaseName) | ||
| $script = $PLOT[$name] | ||
| & python $script --title="HINT - Age-Targeted Vaccine" output/InsetChart.json |
5 changes: 0 additions & 5 deletions
5
Scenarios/Generic/HINT_AgeAndAccess/B_AgeTargetedVaccine/plotPropertyReport.bat
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8 changes: 8 additions & 0 deletions
8
Scenarios/Generic/HINT_AgeAndAccess/B_AgeTargetedVaccine/plotPropertyReport.ps1
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../../../scripts/helpers.ps1 | ||
|
|
||
| Push-Location -Path $PSScriptRoot | ||
| $name = (PSScriptBaseName) | ||
| $script = $PLOT[$name] | ||
| & python $script output/PropertyReport.json |
9 changes: 7 additions & 2 deletions
9
Scenarios/Generic/HINT_AgeAndAccess/B_AgeTargetedVaccine/runEmod.ps1
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
| & ../../../../bin/Eradication -C config.json -I ../../../../Demographics_Files -D ../../../../dll -O output | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../../scripts/helpers.ps1 | ||
|
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||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| & $EMOD --config="config.json" --input-path="$INPUT_ROOT" --dll-path="$DLL_ROOT" --output-path="output" | ||
| Pop-Location |
1 change: 0 additions & 1 deletion
1
Scenarios/Generic/HINT_AgeAndAccess/B_AgeTargetedVaccine/title.txt
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11 changes: 2 additions & 9 deletions
11
Scenarios/Generic/HINT_AgeAndAccess/C_AccessTargetedVaccine/.scenario
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,11 +1,4 @@ | ||
| { | ||
| "plotPropertyReport": { | ||
| "commandline": "python ../../../../bin/plotPropertyReport.py output/PropertyReport.json", | ||
| "script": "plotPropertyReport.py" | ||
| }, | ||
| "plotAllCharts": { | ||
| "script": "plotAllCharts.py", | ||
| "title": "HINT - Access-Targeted Vaccine", | ||
| "report": "output/InsetChart.json" | ||
| } | ||
| "plotAllCharts": "--title=\"HINT - Access-Targeted Vaccine\" output/InsetChart.json", | ||
| "plotPropertyReport": "output/PropertyReport.json" | ||
| } |
11 changes: 5 additions & 6 deletions
11
Scenarios/Generic/HINT_AgeAndAccess/C_AccessTargetedVaccine/plotAllCharts.ps1
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,9 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../../scripts/helpers.ps1 | ||
| . ../../../../../scripts/helpers.ps1 | ||
|
|
||
| $sc = (Get-Content -Path ".scenario" | ConvertFrom-Json -AsHashtable) | ||
| $key = (Split-Path $MyInvocation.MyCommand.Name -LeafBase) | ||
| $config = $sc[$key] | ||
| $pyscript = (Join-Path "$BIN_ROOT" $config.script) | ||
| & python $pyscript --title="$($config.title)" $config.report | ||
| Push-Location -Path $PSScriptRoot | ||
| $name = (PSScriptBaseName) | ||
| $script = $PLOT[$name] | ||
| & python $script --title="HINT - Access-Targeted Vaccine" output/InsetChart.json |
5 changes: 0 additions & 5 deletions
5
Scenarios/Generic/HINT_AgeAndAccess/C_AccessTargetedVaccine/plotPropertyReport.bat
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8 changes: 8 additions & 0 deletions
8
Scenarios/Generic/HINT_AgeAndAccess/C_AccessTargetedVaccine/plotPropertyReport.ps1
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../../../scripts/helpers.ps1 | ||
|
|
||
| Push-Location -Path $PSScriptRoot | ||
| $name = (PSScriptBaseName) | ||
| $script = $PLOT[$name] | ||
| & python $script output/PropertyReport.json |
9 changes: 7 additions & 2 deletions
9
Scenarios/Generic/HINT_AgeAndAccess/C_AccessTargetedVaccine/runEmod.ps1
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
| & ../../../../bin/Eradication -C config.json -I ../../../../Demographics_Files -D ../../../../dll -O output | ||
| Push-Location -Path $PSScriptRoot | ||
|
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||
| . ../../../../scripts/helpers.ps1 | ||
|
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||
| Push-Location -Path $PSScriptRoot | ||
|
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| & $EMOD --config="config.json" --input-path="$INPUT_ROOT" --dll-path="$DLL_ROOT" --output-path="output" | ||
| Pop-Location |
1 change: 0 additions & 1 deletion
1
Scenarios/Generic/HINT_AgeAndAccess/C_AccessTargetedVaccine/title.txt
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,11 +1,4 @@ | ||
| { | ||
| "plotPropertyReport": { | ||
| "commandline": "python ../../../bin/plotPropertyReport.py output/PropertyReport.json -m", | ||
| "script": "plotPropertyReport.py" | ||
| }, | ||
| "plotAllCharts": { | ||
| "script": "plotAllCharts.py", | ||
| "title": "HINT Seattle Commuting", | ||
| "report": "output/InsetChart.json" | ||
| } | ||
| "plotAllCharts": "--title=\"HINT Seattle Commuting\" output/InsetChart.json", | ||
| "plotPropertyReport": "output/PropertyReport.json -m" | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,9 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../scripts/helpers.ps1 | ||
| . ../../../../scripts/helpers.ps1 | ||
|
|
||
| $sc = (Get-Content -Path ".scenario" | ConvertFrom-Json -AsHashtable) | ||
| $key = (Split-Path $MyInvocation.MyCommand.Name -LeafBase) | ||
| $config = $sc[$key] | ||
| $pyscript = (Join-Path "$BIN_ROOT" $config.script) | ||
| & python $pyscript --title="$($config.title)" $config.report | ||
| Push-Location -Path $PSScriptRoot | ||
| $name = (PSScriptBaseName) | ||
| $script = $PLOT[$name] | ||
| & python $script --title="HINT Seattle Commuting" output/InsetChart.json |
4 changes: 0 additions & 4 deletions
4
Scenarios/Generic/HINT_SeattleCommuting/plotPropertyReport.bat
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8 changes: 8 additions & 0 deletions
8
Scenarios/Generic/HINT_SeattleCommuting/plotPropertyReport.ps1
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../../scripts/helpers.ps1 | ||
|
|
||
| Push-Location -Path $PSScriptRoot | ||
| $name = (PSScriptBaseName) | ||
| $script = $PLOT[$name] | ||
| & python $script output/PropertyReport.json -m |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
| & ../../../bin/Eradication -C config.json -I ../../../Demographics_Files -D ../../../dll -O output | ||
| Push-Location -Path $PSScriptRoot | ||
|
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| . ../../../scripts/helpers.ps1 | ||
|
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||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| & $EMOD --config="config.json" --input-path="$INPUT_ROOT" --dll-path="$DLL_ROOT" --output-path="output" | ||
| Pop-Location |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,11 +1,4 @@ | ||
| { | ||
| "plotAllCharts": { | ||
| "script": "plotAllCharts.py", | ||
| "title": "Generic SEIR", | ||
| "report": "output/InsetChart.json" | ||
| }, | ||
| "plotSIRChannels": { | ||
| "commandline": "python ../../../bin/plotSIRChannels.py -c SEIR -t \"Generic SEIR\" output/InsetChart.json", | ||
| "script": "plotSIRChannels.py" | ||
| } | ||
| "plotAllCharts": "--title=\"Generic SEIR\" output/InsetChart.json", | ||
| "plotSIRChannels": "-c SEIR -t \"Generic SEIR\" output/InsetChart.json" | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,9 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../scripts/helpers.ps1 | ||
| . ../../../../scripts/helpers.ps1 | ||
|
|
||
| $sc = (Get-Content -Path ".scenario" | ConvertFrom-Json -AsHashtable) | ||
| $key = (Split-Path $MyInvocation.MyCommand.Name -LeafBase) | ||
| $config = $sc[$key] | ||
| $pyscript = (Join-Path "$BIN_ROOT" $config.script) | ||
| & python $pyscript --title="$($config.title)" $config.report | ||
| Push-Location -Path $PSScriptRoot | ||
| $name = (PSScriptBaseName) | ||
| $script = $PLOT[$name] | ||
| & python $script --title="Generic SEIR" output/InsetChart.json |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../../scripts/helpers.ps1 | ||
|
|
||
| Push-Location -Path $PSScriptRoot | ||
| $name = (PSScriptBaseName) | ||
| $script = $PLOT[$name] | ||
| & python $script -c SEIR -t "Generic SEIR" output/InsetChart.json |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
| & ../../../bin/Eradication -C config.json -I ../../../Demographics_Files -D ../../../dll -O output | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../scripts/helpers.ps1 | ||
|
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||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| & $EMOD --config="config.json" --input-path="$INPUT_ROOT" --dll-path="$DLL_ROOT" --output-path="output" | ||
| Pop-Location |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,11 +1,4 @@ | ||
| { | ||
| "plotAllCharts": { | ||
| "script": "plotAllCharts.py", | ||
| "title": "SEIRS", | ||
| "report": "output/InsetChart.json" | ||
| }, | ||
| "plotSIRChannels": { | ||
| "commandline": "python ../../../bin/plotSIRChannels.py -c SEIRW -t \"SEIRS\" output/InsetChart.json", | ||
| "script": "plotSIRChannels.py" | ||
| } | ||
| "plotAllCharts": "--title=\"SEIRS\" output/InsetChart.json", | ||
| "plotSIRChannels": "-c SEIRW -t \"SEIRS\" output/InsetChart.json" | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,9 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../scripts/helpers.ps1 | ||
| . ../../../../scripts/helpers.ps1 | ||
|
|
||
| $sc = (Get-Content -Path ".scenario" | ConvertFrom-Json -AsHashtable) | ||
| $key = (Split-Path $MyInvocation.MyCommand.Name -LeafBase) | ||
| $config = $sc[$key] | ||
| $pyscript = (Join-Path "$BIN_ROOT" $config.script) | ||
| & python $pyscript --title="$($config.title)" $config.report | ||
| Push-Location -Path $PSScriptRoot | ||
| $name = (PSScriptBaseName) | ||
| $script = $PLOT[$name] | ||
| & python $script --title="SEIRS" output/InsetChart.json |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,8 @@ | ||
| Push-Location -Path $PSScriptRoot | ||
|
|
||
| . ../../../../scripts/helpers.ps1 | ||
|
|
||
| Push-Location -Path $PSScriptRoot | ||
| $name = (PSScriptBaseName) | ||
| $script = $PLOT[$name] | ||
| & python $script -c SEIRW -t "SEIRS" output/InsetChart.json |
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