fresh_vs_frozen_comparison

Multi-modal single-cell and whole-genome sequencing of small, frozen clinical specimens

Yiping Wang*, Joy Linyue Fan*, Johannes C. Melms*, Amit Dipak Amin, Yohanna Georgis, Irving Barrera, Patricia Ho, Somnath Tagore, Gabriel Abril-Rodríguez, Siyu He, Yinuo Jin, Jana Biermann, Matan Hofree, Lindsay Caprio, Simon Berhe, Shaheer A. Khan, Brian S. Henick, Antoni Ribas, Evan Z. Macosko, Fei Chen, Alison M. Taylor, Gary K. Schwartz, Richard D. Carvajal, Elham Azizi, Benjamin Izar

Overview of code structure and corresponding Figures and Tables can be found in code_overview_fresh_vs_frozen_comparison.xlsx Some spatial analysis scripts, listed in code_overview_fresh_vs_frozen_comparison.xlsx, are not in this github repository, but in https://github.com/IzarLab/Melanoma_Brain_Metastasis/Spatial_analysis

Publication

In Press

Processed data available through GEO (GSE192402)

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?&acc=GSE192402

Raw data upload to dbGaP is pending (phs003097.v1.p1)

In near future, raw data will be available at https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs003097.v1.p1