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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,302 @@ | ||
| _target_: deeprootgen.data_model.FormModel | ||
| components: | ||
| parameters: | ||
| collapsible: true | ||
| children: | ||
| - id: max-order-slider | ||
| param: max_order | ||
| label: Maximum order | ||
| help: The maximum root order | ||
| class_name: dash.dcc.Slider | ||
| kwargs: | ||
| min: 1 | ||
| max: 5 | ||
| value: 2 | ||
| step: 1 | ||
| persistence: true | ||
| - id: root-ratio-input | ||
| param: root_ratio | ||
| label: Root ratio | ||
| help: The ratio between structural and fine roots | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0 | ||
| max: 1 | ||
| step: 0.1 | ||
| value: 0.5 | ||
| persistence: true | ||
| - id: fine-root-threshold-input | ||
| param: fine_root_threshold | ||
| label: Fine root threshold | ||
| help: Threshold for classifying a root as a fine root, rather than a structural root (cm) | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0 | ||
| step: 0.01 | ||
| value: 0.06 | ||
| persistence: true | ||
| - id: outer-primary-root-num-input | ||
| param: outer_root_num | ||
| label: Number of outer roots | ||
| help: The number of outer primary roots to be generated | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0 | ||
| max: 20 | ||
| step: 1 | ||
| value: 10 | ||
| persistence: true | ||
| - id: inner-primary-root-num-input | ||
| param: inner_root_num | ||
| label: Number of inner roots | ||
| help: The number of inner primary roots to be generated | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0 | ||
| max: 20 | ||
| step: 1 | ||
| value: 8 | ||
| persistence: true | ||
| - id: min-length-primary-root-input | ||
| param: min_primary_length | ||
| label: Primary root minimum length | ||
| help: The minimum length of each primary root (cm) | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 1 | ||
| max: 50 | ||
| step: 1 | ||
| value: 20 | ||
| persistence: true | ||
| - id: max-length-primary-root-input | ||
| param: max_primary_length | ||
| label: Primary root maximum length | ||
| help: The maximum length of each primary root (cm) | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 1 | ||
| max: 50 | ||
| step: 1 | ||
| value: 30 | ||
| persistence: true | ||
| - id: base-diameter-root-input | ||
| param: base_diameter | ||
| label: Base root diameter | ||
| help: The base diameter of the first segment of each root (cm) | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0.001 | ||
| max: 1 | ||
| step: 0.01 | ||
| value: 0.11 | ||
| persistence: true | ||
| - id: root-apex-input | ||
| param: apex_diameter | ||
| label: Apex diameter | ||
| help: The diameter of the root apex (cm) | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0.01 | ||
| max: 1 | ||
| step: 0.01 | ||
| value: 0.02 | ||
| persistence: true | ||
| - id: diameter-reduction-factor-input | ||
| param: diameter_reduction | ||
| label: Diameter reduction | ||
| help: The diameter reduction factor for subsequent root segments. | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0 | ||
| max: 1 | ||
| step: 0.1 | ||
| value: 0.2 | ||
| persistence: true | ||
| - id: min-num-secondary-roots-input | ||
| param: min_sec_root_num | ||
| label: Minimum number of secondary roots | ||
| help: The minimum number of secondary roots to be generated | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0 | ||
| step: 1 | ||
| value: 1 | ||
| persistence: true | ||
| - id: max-num-secondary-roots-input | ||
| param: max_sec_root_num | ||
| label: Maximum number of secondary roots | ||
| help: The maximum number of secondary roots to be generated | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0 | ||
| max: 20 | ||
| step: 1 | ||
| value: 3 | ||
| persistence: true | ||
| - id: secondary-root-growth-input | ||
| param: growth_sec_root | ||
| label: Secondary root growth rate | ||
| help: The growth rate for the number of secondary roots per root order | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0 | ||
| step: 0.1 | ||
| value: 0.2 | ||
| persistence: true | ||
| - id: min-length-secondary-root-input | ||
| param: min_sec_root_length | ||
| label: Secondary root minimum length | ||
| help: The minimum length of each secondary root (cm) | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 1 | ||
| max: 250 | ||
| step: 1 | ||
| value: 100 | ||
| persistence: true | ||
| - id: max-length-secondary-root-input | ||
| param: max_sec_root_length | ||
| label: Secondary root maximum length | ||
| help: The maximum length of each secondary root (cm) | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 1 | ||
| max: 500 | ||
| step: 1 | ||
| value: 220 | ||
| persistence: true | ||
| - id: segments-per-root-input | ||
| param: segments_per_root | ||
| label: Segments per root | ||
| help: The number of segments per root | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 1 | ||
| max: 500 | ||
| step: 1 | ||
| value: 50 | ||
| persistence: true | ||
| - id: root-length-reduction-input | ||
| param: length_reduction | ||
| label: Length reduction | ||
| help: The root length reduction factor | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0 | ||
| max: 1 | ||
| step: 0.1 | ||
| value: 0.5 | ||
| persistence: true | ||
| - id: root-vary-input | ||
| param: root_vary | ||
| label: Root segment variance | ||
| help: Random variation in degrees of subsequent root segments along x, y, and z axes | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0 | ||
| max: 360 | ||
| step: 1 | ||
| value: 30 | ||
| persistence: true | ||
| - id: enable-soil-input | ||
| param: enable_soil | ||
| label: Enable soil | ||
| help: Enable the soil voxel grid into the simulation. | ||
| class_name: dash_daq.BooleanSwitch.BooleanSwitch | ||
| kwargs: {} | ||
| - id: soil-layer-height-input | ||
| param: soil_layer_height | ||
| label: Soil layer height | ||
| help: The height of each soil layer (cm) | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0 | ||
| max: 100 | ||
| step: 10 | ||
| value: 10 | ||
| persistence: true | ||
| - id: soil-layer-width-input | ||
| param: soil_layer_width | ||
| label: Soil layer width | ||
| help: The width of each soil layer (cm) | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0 | ||
| max: 100 | ||
| step: 10 | ||
| value: 10 | ||
| persistence: true | ||
| - id: soil-n-layers | ||
| param: soil_n_layers | ||
| label: Number soil layers | ||
| help: The number of vertical soil layers | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0 | ||
| max: 20 | ||
| step: 1 | ||
| value: 1 | ||
| persistence: true | ||
| - id: soil-n-cols | ||
| param: soil_n_cols | ||
| label: Number soil columns | ||
| help: The number of horizontal soil layers/columns | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0 | ||
| max: 20 | ||
| step: 1 | ||
| value: 1 | ||
| persistence: true | ||
| - id: random-seed-input | ||
| param: random_seed | ||
| label: Random seed | ||
| help: The simulation random seed to ensure replicability | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| step: 1 | ||
| value: 0 | ||
| persistence: true | ||
| - id: max-val-attempts-input | ||
| param: max_val_attempts | ||
| label: Maximum validation attempts | ||
| help: The maximum number of attempts to validate each root (for plausibility) within the root system. | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: number | ||
| min: 0 | ||
| max: 1000 | ||
| step: 1 | ||
| value: 50 | ||
| persistence: true | ||
| - id: simulation-tag-input | ||
| param: simulation_tag | ||
| label: Simulation tag | ||
| help: A tag to group together multiple simulations | ||
| class_name: dash_bootstrap_components.Input | ||
| kwargs: | ||
| type: text | ||
| value: default | ||
| persistence: true |
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| @@ -1,6 +1,7 @@ | ||
| defaults: | ||
| - _self_ | ||
| - calibration_form: common | ||
| - experiment: mlflow | ||
| - form: common | ||
| - object_storage: minio | ||
| - orchestration: prefect | ||
| - simulation_form: common |
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