Hard coral cover resilience in the Coral Triangle in a context of global decline

This repository contains code associated to the article:

Wicquart, J. et al. (in prep.). Hard coral cover resilience in the Coral Triangle in a context of global decline.

1. Abstract

[To complete]

2. How to download this project?

On the project main page on GitHub, click on the green button Code and then click on Download ZIP

3. Datasets used

• 2020 GCRMN modeled hard coral cover trends
• Natural Earth Data
• Coral Reef Watch

4. Code description

• 00_site-coordinates.R

• 01_extract_dhw-percent.R

• 02_figure-1.R

• 03_figure-2.R

• 04_figure-3.R

• 05_figure-4.R

• 06_supp-figure-1.R

• 07_supp-figure-2.R

• 📁 functions

  • data_cleaning.R
  • data_cleaning.R
  • data_cleaning.R Graphical parameters

5. How to report issues?

Please report any bugs or issues HERE.

6. Reproducibility parameters

R version 4.3.1 (2023-06-16 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 18363)

Matrix products: default


locale:
[1] LC_COLLATE=French_France.utf8  LC_CTYPE=French_France.utf8   
[3] LC_MONETARY=French_France.utf8 LC_NUMERIC=C                  
[5] LC_TIME=French_France.utf8    

time zone: Europe/Paris
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] tidytext_0.4.1  ggtext_0.1.2    patchwork_1.1.3 furrr_0.3.1    
 [5] future_1.33.0   terra_1.7-46    sf_1.0-14       magrittr_2.0.3 
 [9] lubridate_1.9.3 forcats_1.0.0   stringr_1.5.0   dplyr_1.1.3    
[13] purrr_1.0.2     readr_2.1.4     tidyr_1.3.0     tibble_3.2.1   
[17] ggplot2_3.4.3   tidyverse_2.0.0

loaded via a namespace (and not attached):
 [1] gtable_0.3.4       xfun_0.40          lattice_0.21-8     tzdb_0.4.0        
 [5] vctrs_0.6.3        tools_4.3.1        generics_0.1.3     parallel_4.3.1    
 [9] proxy_0.4-27       fansi_1.0.4        janeaustenr_1.0.0  tokenizers_0.3.0  
[13] pkgconfig_2.0.3    Matrix_1.6-1.1     KernSmooth_2.23-22 lifecycle_1.0.3   
[17] compiler_4.3.1     munsell_0.5.0      codetools_0.2-19   SnowballC_0.7.1   
[21] htmltools_0.5.6    class_7.3-22       yaml_2.3.7         pillar_1.9.0      
[25] classInt_0.4-10    parallelly_1.36.0  tidyselect_1.2.0   digest_0.6.33     
[29] stringi_1.7.12     listenv_0.9.0      fastmap_1.1.1      grid_4.3.1        
[33] colorspace_2.1-0   cli_3.6.1          utf8_1.2.3         e1071_1.7-13      
[37] withr_2.5.1        scales_1.2.1       timechange_0.2.0   rmarkdown_2.25    
[41] globals_0.16.2     hms_1.1.3          evaluate_0.22      knitr_1.44        
[45] rlang_1.1.1        gridtext_0.1.5     Rcpp_1.0.11        glue_1.6.2        
[49] DBI_1.1.3          xml2_1.3.5         rstudioapi_0.15.0  R6_2.5.1          
[53] units_0.8-4