Merge branch 'main' into feature/arXivId

.github/workflows/check-links.yml

@@ -32,7 +32,7 @@ jobs:
           restore-keys: cache-lychee-
       - name: Link Checker
         id: lychee
-        uses: lycheeverse/lychee-action@v2.1.0
+        uses: lycheeverse/lychee-action@v2.2.0
         with:
           fail: true
           args: --accept '200,201,202,203,204,403,429,500' --max-concurrency 1 --cache --no-progress --exclude-all-private './**/*.md'

.github/workflows/deployment-arm64.yml

@@ -69,12 +69,12 @@ jobs:
           submodules: 'true'
           show-progress: 'false'
       - name: Install GitVersion
-        uses: gittools/actions/gitversion/setup@v3.1.1
+        uses: gittools/actions/gitversion/setup@v3.1.3
         with:
           versionSpec: "5.x"
       - name: Run GitVersion
         id: gitversion
-        uses: gittools/actions/gitversion/execute@v3.1.1
+        uses: gittools/actions/gitversion/execute@v3.1.3
       - name: Setup JDK
         uses: actions/setup-java@v4
         with:

.github/workflows/deployment-jdk-ea.yml

@@ -85,12 +85,12 @@ jobs:
           packages: pigz
           version: 1.0
       - name: Install GitVersion
-        uses: gittools/actions/gitversion/setup@v3.1.1
+        uses: gittools/actions/gitversion/setup@v3.1.3
         with:
           versionSpec: "5.x"
       - name: Run GitVersion
         id: gitversion
-        uses: gittools/actions/gitversion/execute@v3.1.1
+        uses: gittools/actions/gitversion/execute@v3.1.3
 
       # JDK
       - name: 'Set up JDK ${{ matrix.jdk }}'

.github/workflows/deployment.yml

@@ -81,12 +81,12 @@ jobs:
           packages: pigz
           version: 1.0
       - name: Install GitVersion
-        uses: gittools/actions/gitversion/setup@v3.1.1
+        uses: gittools/actions/gitversion/setup@v3.1.3
         with:
           versionSpec: "5.x"
       - name: Run GitVersion
         id: gitversion
-        uses: gittools/actions/gitversion/execute@v3.1.1
+        uses: gittools/actions/gitversion/execute@v3.1.3
       - name: Setup JDK
         uses: actions/setup-java@v4
         with:

.github/workflows/tests.yml

@@ -109,7 +109,7 @@ jobs:
           submodules: 'false'
           show-progress: 'false'
       - name: markdownlint-cli2-action
-        uses: DavidAnson/markdownlint-cli2-action@v18
+        uses: DavidAnson/markdownlint-cli2-action@v19
         with:
           globs: |
             *.md

build.gradle

@@ -186,7 +186,7 @@ dependencies {
     implementation 'com.h2database:h2-mvstore:2.3.232'
 
     // required for reading write-protected PDFs - see https://github.com/JabRef/jabref/pull/942#issuecomment-209252635
-    implementation 'org.bouncycastle:bcprov-jdk18on:1.79'
+    implementation 'org.bouncycastle:bcprov-jdk18on:1.80'
 
     implementation 'commons-cli:commons-cli:1.9.0'
 
@@ -301,7 +301,7 @@ dependencies {
     implementation 'com.vladsch.flexmark:flexmark:0.64.8'
     implementation 'com.vladsch.flexmark:flexmark-html2md-converter:0.64.8'
 
-    implementation group: 'net.harawata', name: 'appdirs', version: '1.2.2'
+    implementation group: 'net.harawata', name: 'appdirs', version: '1.3.0'
 
     implementation group: 'org.jooq', name: 'jool', version: '0.9.15'
     // JAX-RS implemented by Jersey
@@ -310,7 +310,7 @@ dependencies {
     // Implementation of the API
     implementation 'org.glassfish.jersey.core:jersey-server:3.1.10'
     // injection framework
-    implementation 'org.glassfish.jersey.inject:jersey-hk2:3.1.9'
+    implementation 'org.glassfish.jersey.inject:jersey-hk2:3.1.10'
     implementation 'org.glassfish.hk2:hk2-api:3.1.1'
     // testImplementation 'org.glassfish.hk2:hk2-testing:3.0.4'
     // implementation 'org.glassfish.hk2:hk2-testing-jersey:3.0.4'
@@ -391,7 +391,7 @@ dependencies {
     testImplementation "org.testfx:testfx-core:4.0.16-alpha"
     testImplementation "org.testfx:testfx-junit5:4.0.16-alpha"
     testImplementation "org.hamcrest:hamcrest-library:3.0"
-    testImplementation "com.github.javaparser:javaparser-symbol-solver-core:3.26.2"
+    testImplementation "com.github.javaparser:javaparser-symbol-solver-core:3.26.3"
 
     // recommended by https://github.com/wiremock/wiremock/issues/2149#issuecomment-1835775954
     testImplementation 'org.wiremock:wiremock-standalone:3.10.0'

src/main/java/org/jabref/logic/search/indexing/BibFieldsIndexer.java

@@ -285,8 +285,10 @@ private void removeFromIndex(BibEntry entry) {
     }
 
     public void updateEntry(BibEntry entry, Field field) {
-        removeField(entry, field);
-        insertField(entry, field);
+        synchronized (entry.getId()) {
+            removeField(entry, field);
+            insertField(entry, field);
+        }
     }
 
     private void insertField(BibEntry entry, Field field) {