Run2ptCorr.csh

#! /bin/tcsh
#SBATCH -p batch
#SBATCH -n 16
#SBATCH --time=5:00:00
#SBATCH --mem=55GB

module load intel/2015c
module load OpenMPI/1.8.8-iccifort-2015.3.187
module load CUDA/7.0.28

set curdir = /home/a1193348/Scripts/FSpython/
cd ${curdir}
set gencfeff = /home/a1193348/code/gencf/bin/
set exe = twopoint.x


#  If variable icfg is not set, then exit
if (! $?icfg) then
    echo "Error: icfg variable not set."
    exit 1
endif

if (! $?ism) then
    echo "ism variable not set."
    exit 1
endif

if (! $?jobid) then
    echo "jobid variable not set."
    exit 1
endif

if (! $?fcfg) then
    echo "fcfg variable not set, setting to icfg"
    set fcfg = ${icfg}
endif

if (! $?mach) then
    echo "mach variable not set."
    exit 1
endif

set reportfolder = /data/cssm/jdragos/reports/${mach}/
set reportfile = ${reportfolder}${jobid}.out

    mkdir -p ${reportfile}
    rm ${reportfile} -rf
    echo "cfg = ${icfg}, ism = ${ism}, mpirun 2 point Corr"
    echo 'starting '`date`
     mpirun -np 16 ${gencfeff}${exe}  <<EOF > $reportfile
${curdir}${jobid}
EOF

    # If previous exec terminated with error, then exit
    if ($? != 0) then
	echo "Error with: ${jobid}"
	echo ""

cat <<EOF >> ${curdir}errlist.2ptcorr
${jobid}
EOF
	exit 1
     endif
    echo 'finished '`date`

python ${curdir}ReSubmit.py $icfg $fcfg $gfos 'twoptcorr' $ism