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Releases: James-Thorson-NOAA/VAST

Fix default `projargs` and deploy range-edge indices

17 Mar 17:57
339db31
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Two changes:

  • Fix the default value for projargs when plotting to avoid projection issues with global coastline shapefile
  • Change default settings to now calculate and plot range-edges.

Adding `predict` and marginal effects plots

13 Mar 14:29
6470a36
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Added functionality includes:

  • predict S3-class generic function enters beta testing
  • Integrating effects package to facilitate plots of marginal covariate effects
  • Re-adding continuous integration testing of core functionality

See NEWS.pdf for more details

hotfix for typos affecting backwards compatibility and little used features

10 Dec 17:32
c6c60b7
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Typos identified by Arnaud Gruss affecting:

  • Backwards compatibility
  • Different specification for vessel effects
  • Different specification for spatially varying responses for the two linear predictors
    where any issues should have resulted in model-build errors, and therefore likely had little impact on users.

Improved covariate interface and spatially varying catchability

22 Sep 21:19
65d7b9a
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VAST release 3.6.0 includes new features:

  • NEWS document
  • Improved covariates interface
  • Spatially varying catchability effects

Hotfix for previous minor release...

17 Sep 00:12
e6db762
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... fixing location of brackets (also having actually running the original example and integrated-tests)

Hotfix for crash...

16 Sep 15:56
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... occurring when specifying density-covariates using formula interface, specifically when including negative values (for reasons that were not captured in current set of integrated tests). Thanks to @TiffanyVidal in issue #251 for showing the bug in a simple way, and also identifying the issue.

Hotfix for macOS compile issue...

11 Sep 16:41
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... eliminating use of std::complex, which causes errors in some macOS compilers for reasons unknown. Thanks Dan Cushing for using his machine to test fix. This fix eliminates a rarely used feature for estimating interactions with bounds on species fluctuations (VamConfig[1]=3)

Hotfix for bug in issue #246

21 Aug 19:06
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Fix bug in VAST::make_data resulting in obviously nonsensical results in cases where response b_i contains some NA values and when Options['treat_nonencounter_as_zero']==TRUE (i.e., an index-standardization model). See #246 and thanks @Cole-Monnahan-NOAA for flagging the problem.

Fix compile bug...

04 Aug 21:20
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... as documented in #242, changing abs(.) to fabs(.) in CPP version >= 9.3.0

Barrier-SPDE and cohort effects

26 Jun 17:08
097d2d5
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VAST release 3.5.0 involves :

  • Adding feature for barrier-SPDE approach;
  • Changing density covariates to index by X_gctp to allow treating cohort effects via the spatially-varying coefficient interface
  • Eliminating the previous, deprecated interface to seasonal effects to simply CPP code