diff --git a/DESCRIPTION b/DESCRIPTION index 57b6e3a..9c226fd 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: phylosem Type: Package Title: Phylogenetic Structural Equation Model -Version: 1.0.0 -Date: 2023-08-15 +Version: 1.0.1 +Date: 2023-09-18 Authors@R: c(person(given = "James", family = "Thorson", @@ -24,7 +24,6 @@ Depends: TMB, R (>= 4.0.0), Suggests: - phylosignal, DiagrammeR, semPlot, phytools, diff --git a/R/phylosem.R b/R/phylosem.R index f85b319..645b1b5 100644 --- a/R/phylosem.R +++ b/R/phylosem.R @@ -161,19 +161,6 @@ #' nodeLabels = myplot@Vars$name ) #' } #' -#' # Plot using phylosignal -#' if( require(phylosignal) ){ -#' dotplot( my_phylo4d ) -#' gridplot( my_phylo4d ) -#' -#' # Cluster based on phylogeny and traits -#' gC = graphClust( my_phylo4d, -#' lim.phylo = 5, -#' lim.trait = 5, -#' scale.lim = FALSE) -#' plot(gC, which = "graph", ask = FALSE) -#' } -#' #' @useDynLib phylosem, .registration = TRUE #' @export phylosem <- diff --git a/man/phylosem.Rd b/man/phylosem.Rd index 6e24784..9126d8f 100644 --- a/man/phylosem.Rd +++ b/man/phylosem.Rd @@ -152,19 +152,6 @@ if( require(semPlot) ){ nodeLabels = myplot@Vars$name ) } -# Plot using phylosignal -if( require(phylosignal) ){ - dotplot( my_phylo4d ) - gridplot( my_phylo4d ) - - # Cluster based on phylogeny and traits - gC = graphClust( my_phylo4d, - lim.phylo = 5, - lim.trait = 5, - scale.lim = FALSE) - plot(gC, which = "graph", ask = FALSE) -} - } \references{ **Introducing the package, its features, and comparison with other software