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README.md

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Exploratory work on intermediate ligand generation for FEP.

See notebook for list of FEP ligand pairs. Env.yml can be used to create a conda environment that contains the dependencies (env is basically the same as the default dev biosimspace env, see https://biosimspace.org/install.html).

Dependencies:

  • rdkit
  • matplotlib
  • ipython/jupyter
  • pandas