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| @@ -1,17 +1,17 @@ | ||
| *.mlx -crlf -diff -merge | ||
| *.mat -crlf -diff -merge | ||
| *.fig -crlf -diff -merge | ||
| *.p -crlf -diff -merge | ||
| *.slx -crlf -diff -merge | ||
| *.mdl -crlf -diff -merge | ||
| *.mdlp -crlf -diff -merge | ||
| *.slxp -crlf -diff -merge | ||
| *.sldd -crlf -diff -merge | ||
| *.mexa64 -crlf -diff -merge | ||
| *.mexw64 -crlf -diff -merge | ||
| *.mexmaci64 -crlf -diff -merge | ||
| *.xlsx -crlf -diff -merge | ||
| *.docx -crlf -diff -merge | ||
| *.pdf -crlf -diff -merge | ||
| *.jpg -crlf -diff -merge | ||
| *.mlx -crlf -diff -merge | ||
| *.mat -crlf -diff -merge | ||
| *.fig -crlf -diff -merge | ||
| *.p -crlf -diff -merge | ||
| *.slx -crlf -diff -merge | ||
| *.mdl -crlf -diff -merge | ||
| *.mdlp -crlf -diff -merge | ||
| *.slxp -crlf -diff -merge | ||
| *.sldd -crlf -diff -merge | ||
| *.mexa64 -crlf -diff -merge | ||
| *.mexw64 -crlf -diff -merge | ||
| *.mexmaci64 -crlf -diff -merge | ||
| *.xlsx -crlf -diff -merge | ||
| *.docx -crlf -diff -merge | ||
| *.pdf -crlf -diff -merge | ||
| *.jpg -crlf -diff -merge | ||
| *.png -crlf -diff -merge |
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|---|---|---|
| @@ -1,19 +1,19 @@ | ||
| function[dims] = char2dims( dimChar ) | ||
| % Converts a comma delimited character array of dimension names to string | ||
| dims = ""; | ||
| if ~isempty(dimChar) | ||
| comma = strfind(dimChar, ','); | ||
| nDims = numel(comma) + 1; | ||
| dims = cell(1, nDims); | ||
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| start = [1, comma+1]; | ||
| stop = [comma-1, numel(dimChar)]; | ||
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| for d = 1:nDims | ||
| dims{d} = dimChar( start(d):stop(d) ); | ||
| end | ||
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| dims = string( dims ); | ||
| end | ||
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| function[dims] = char2dims( dimChar ) | ||
| % Converts a comma delimited character array of dimension names to string | ||
| dims = ""; | ||
| if ~isempty(dimChar) | ||
| comma = strfind(dimChar, ','); | ||
| nDims = numel(comma) + 1; | ||
| dims = cell(1, nDims); | ||
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| start = [1, comma+1]; | ||
| stop = [comma-1, numel(dimChar)]; | ||
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| for d = 1:nDims | ||
| dims{d} = dimChar( start(d):stop(d) ); | ||
| end | ||
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| dims = string( dims ); | ||
| end | ||
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| end |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,10 +1,10 @@ | ||
| function[dimChar] = dims2char( dims ) | ||
| % Converts a string array of dimension names to a comma delimited char | ||
| dimChar = ''; | ||
| if ~isempty(dims) | ||
| dimChar = char(dims(1)); | ||
| for k = 2:numel(dims) | ||
| dimChar = [dimChar,',',char(dims(k))]; %#ok<AGROW> | ||
| end | ||
| end | ||
| function[dimChar] = dims2char( dims ) | ||
| % Converts a string array of dimension names to a comma delimited char | ||
| dimChar = ''; | ||
| if ~isempty(dims) | ||
| dimChar = char(dims(1)); | ||
| for k = 2:numel(dims) | ||
| dimChar = [dimChar,',',char(dims(k))]; %#ok<AGROW> | ||
| end | ||
| end | ||
| end |
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|---|---|---|
| @@ -1,24 +1,24 @@ | ||
| function[siz] = fullSize( siz, d ) | ||
| %% This gets the size of an array through a minumum number of dimensions. | ||
| % | ||
| % siz = fullSize( siz, d ) | ||
| % Pads a size vector with trailing singletons through a minimum of d dimensions. | ||
| % | ||
| % ----- Inputs ----- | ||
| % | ||
| % siz: A size vector | ||
| % | ||
| % d: The minimum number of dimensions. | ||
| % | ||
| % ----- Outputs ----- | ||
| % | ||
| % siz: The size of the array. | ||
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| % ----- Written By ----- | ||
| % Jonathan King, University of Arizona, 2019 | ||
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| % Get the size | ||
| nDim = numel(siz); | ||
| siz(nDim+1:d) = 1; | ||
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| function[siz] = fullSize( siz, d ) | ||
| %% This gets the size of an array through a minumum number of dimensions. | ||
| % | ||
| % siz = fullSize( siz, d ) | ||
| % Pads a size vector with trailing singletons through a minimum of d dimensions. | ||
| % | ||
| % ----- Inputs ----- | ||
| % | ||
| % siz: A size vector | ||
| % | ||
| % d: The minimum number of dimensions. | ||
| % | ||
| % ----- Outputs ----- | ||
| % | ||
| % siz: The size of the array. | ||
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| % ----- Written By ----- | ||
| % Jonathan King, University of Arizona, 2019 | ||
|
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| % Get the size | ||
| nDim = numel(siz); | ||
| siz(nDim+1:d) = 1; | ||
|
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| end |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,49 +1,49 @@ | ||
| classdef (Abstract) gridData | ||
| % Defines an interface for data structures that are placed in a | ||
| % gridFile container object. | ||
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| properties | ||
| dimOrder; % The order of dimensions in the gridded dataset | ||
| size; % The size of the gridded dataset | ||
| mergeSet; % Maps the merged dimensions back onto unmerged dimensions | ||
| unmergedSize; % Size without any squashed dimensions | ||
| merge; % Indicates which dimensions should be merged | ||
| end | ||
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| % Interface methods | ||
| methods (Abstract = true) | ||
| % Reads data from the data structure | ||
| [X] = read( obj, scs ); | ||
| end | ||
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| % Static Utilities | ||
| methods (Static) | ||
| % Removes trailing singletons from a size vector | ||
| siz = squeezeSize( siz ); | ||
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| % Returns a list of numeric types | ||
| [types] = numericTypes | ||
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| % Get the size up to n dimensions | ||
| [siz] = fullSize( siz, d ) | ||
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| % Initial processing of merged dimensions | ||
| [umSize, mSize, uniqDim, merge, mergeSet] = processSourceDims( dimOrder, iSize ) | ||
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| % Actually merge data dimension | ||
| [X] = mergeDims( X, merge ) | ||
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| % Convert string array of dimensions to comma delimited char | ||
| dimChar = dims2char( dims ); | ||
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| % Convert comma delimietd char to string array of dimensions | ||
| dims = char2dims( dimChar ); | ||
| end | ||
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| methods | ||
| % Adjust SCS and keep for merged | ||
| [fullSCS, keep] = unmergeSCS( obj, scs ) | ||
| end | ||
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| end | ||
| classdef (Abstract) gridData | ||
| % Defines an interface for data structures that are placed in a | ||
| % gridFile container object. | ||
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| properties | ||
| dimOrder; % The order of dimensions in the gridded dataset | ||
| size; % The size of the gridded dataset | ||
| mergeSet; % Maps the merged dimensions back onto unmerged dimensions | ||
| unmergedSize; % Size without any squashed dimensions | ||
| merge; % Indicates which dimensions should be merged | ||
| end | ||
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| % Interface methods | ||
| methods (Abstract = true) | ||
| % Reads data from the data structure | ||
| [X] = read( obj, scs ); | ||
| end | ||
|
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| % Static Utilities | ||
| methods (Static) | ||
| % Removes trailing singletons from a size vector | ||
| siz = squeezeSize( siz ); | ||
|
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| % Returns a list of numeric types | ||
| [types] = numericTypes | ||
|
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| % Get the size up to n dimensions | ||
| [siz] = fullSize( siz, d ) | ||
|
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| % Initial processing of merged dimensions | ||
| [umSize, mSize, uniqDim, merge, mergeSet] = processSourceDims( dimOrder, iSize ) | ||
|
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| % Actually merge data dimension | ||
| [X] = mergeDims( X, merge ) | ||
|
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| % Convert string array of dimensions to comma delimited char | ||
| dimChar = dims2char( dims ); | ||
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| % Convert comma delimietd char to string array of dimensions | ||
| dims = char2dims( dimChar ); | ||
| end | ||
|
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| methods | ||
| % Adjust SCS and keep for merged | ||
| [fullSCS, keep] = unmergeSCS( obj, scs ) | ||
| end | ||
|
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| end | ||
|
|
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,29 +1,29 @@ | ||
| function[X] = mergeDims( X, merge ) | ||
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| % For each set of merged dimension | ||
| mergeSet = unique( merge(~isnan(merge)) ); | ||
| dimIndex = 1:numel(merge); | ||
| for m = 1:numel(mergeSet) | ||
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| % Get the dimensions being merged and permute to front | ||
| dims = ( mergeSet(m) == merge ); | ||
| permOrder = [dimIndex(dims), dimIndex(~dims)]; | ||
| X = permute( X, permOrder ); | ||
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| % Reshape the merged dims. Replace secondary dimensions with singletons | ||
| % to preserve dimension order | ||
| siz = size(X); | ||
| nMerge = sum(dims); | ||
| X = reshape( X, [prod(siz(1:nMerge)), ones(1,nMerge-1), siz(nMerge+1:end)] ); | ||
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| % Unpermute | ||
| [~, unorder] = sort( permOrder ); | ||
| X = permute( X, unorder ); | ||
| end | ||
|
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| % Remove the merged singletons | ||
| X = squeeze(X); | ||
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| end | ||
|
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| function[X] = mergeDims( X, merge ) | ||
|
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| % For each set of merged dimension | ||
| mergeSet = unique( merge(~isnan(merge)) ); | ||
| dimIndex = 1:numel(merge); | ||
| for m = 1:numel(mergeSet) | ||
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| % Get the dimensions being merged and permute to front | ||
| dims = ( mergeSet(m) == merge ); | ||
| permOrder = [dimIndex(dims), dimIndex(~dims)]; | ||
| X = permute( X, permOrder ); | ||
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| % Reshape the merged dims. Replace secondary dimensions with singletons | ||
| % to preserve dimension order | ||
| siz = size(X); | ||
| nMerge = sum(dims); | ||
| X = reshape( X, [prod(siz(1:nMerge)), ones(1,nMerge-1), siz(nMerge+1:end)] ); | ||
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| % Unpermute | ||
| [~, unorder] = sort( permOrder ); | ||
| X = permute( X, unorder ); | ||
| end | ||
|
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| % Remove the merged singletons | ||
| X = squeeze(X); | ||
|
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| end | ||
|
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|
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,7 @@ | ||
| function[types] = numericTypes | ||
| % Returns a list of matlab numeric types. | ||
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| types = ["single";"double";"int8";"uint8";"int16";"uint16";"int32";"uint32";... | ||
| "int64";"uint64"]; | ||
|
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| function[types] = numericTypes | ||
| % Returns a list of matlab numeric types. | ||
|
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| types = ["single";"double";"int8";"uint8";"int16";"uint16";"int32";"uint32";... | ||
| "int64";"uint64"]; | ||
|
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| end |
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