allen-ivy-glioblastoma-atlas.yaml

Name: Allen Ivy Glioblastoma Atlas
Description: |
  This dataset consists of images of glioblastoma human brain tumor tissue sections that have been probed for expression of particular genes believed to play a role in development of the cancer.  Each tissue section is adjacent to another section that was stained with a reagent useful for identifying histological features of the tumor.  Each of these types of images has been completely annotated for tumor features by a machine learning process trained by expert medical doctors.
Contact: awspds@alleninstitute.org
Documentation: https://glioblastoma.alleninstitute.org/static/docs
ManagedBy: "[Allen Institute](http://www.alleninstitute.org/)"
UpdateFrequency: Never
Tags:
  - aws-pds
  - biology
  - genetic
  - gene expression
  - imaging
  - neurobiology
  - image processing
  - life sciences
  - machine learning
  - computer vision
  - cancer
  - glioblastoma
  - Homo sapiens
License: http://www.alleninstitute.org/legal/terms-use/
Resources:
  - Description: Project data files in a public bucket
    ARN: arn:aws:s3:::allen-ivy-glioblastoma-atlas
    Region: us-west-2
    Type: S3 Bucket
DataAtWork:
  Tutorials:
    - Title: Accessing Ivy Glioblastoma Atlas Project data
      URL: https://github.com/AllenInstitute/open_dataset_tools/blob/main/example_notebooks/Accessing_Ivy_Glioblastoma_Atlas_Project_Data.ipynb
      AuthorName: Allen Institute for Brain Science
      AuthorURL: www.alleninstitute.org
  Tools & Applications:
    - Title: Ivy Glioblastoma Atlas Project
      URL: https://glioblastoma.alleninstitute.org
      AuthorName: Allen Institute for Brain Science
      AuthorURL: www.alleninstitute.org
  Publications:
    - Title: An anatomic transcriptional atlas of human glioblastoma
      URL: http://science.sciencemag.org/content/360/6389/660
      AuthorName: Ralph Puchalski, et al.
      AuthorURL: www.alleninstitute.org