DESCRIPTION

Package: MetaboDynamics
Title: Bayesian analysis of longitudinal metabolomics data
Version: 0.99.1 
Authors@R: 
    c(person(given="Katja",family= "Danielzik", email="katja.danielzik@uni-due.de", role = c("aut", "cre"),
    comment=c(ORCID="0009-0007-5021-6212")),
    person(given="Simo",family="Kitanovski",role="ctb"),
    person(given="Johann",family="Matschke",role="ctb"),
    person(given="Daniel",family="Hoffmann",role="ctb"))
URL: https://github.com/KatjaDanielzik/MetaboDynamics
BugReports: https://github.com/KatjaDanielzik/MetaboDynamics/issues
Description: MetaboDynamics is an R-package that provides a framework of probabilistic models to analyze longitudinal metabolomics data. It enables robust estimation of mean concentrations despite varying spread between timepoints and reports differences between timepoints as well as metabolite specific dynamics profiles that can be used for identifying "dynamics clusters" of metabolites of similar dynamics. Provides probabilistic over-representation analysis and comparison betweeen clusters of different experimental conditions.
License: GPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests: 
    knitr,
    rmarkdown,
    BiocStyle,
    testthat (>= 3.0.0)
Config/testthat/edition: 3
Imports: 
    dplyr (>= 1.1.4),
    ggplot2 (>= 3.5.1),
    KEGGREST (>= 1.44.1),
    methods,
    Rcpp (>= 0.12.0),
    RcppParallel (>= 5.0.1),
    rstan (>= 2.18.1),
    rstantools (>= 2.4.0),
    stringr (>= 1.5.1),
    SummarizedExperiment (>= 1.34.0),
    tidyr (>= 1.3.1)
VignetteBuilder: knitr
Depends: 
    R (>= 4.4.0)
LazyData: false
Biarch: true
LinkingTo: 
    BH (>= 1.66.0),
    Rcpp (>= 0.12.0),
    RcppEigen (>= 0.3.3.3.0),
    RcppParallel (>= 5.0.1),
    rstan (>= 2.18.1),
    StanHeaders (>= 2.18.0)
SystemRequirements: GNU make
biocViews: Software,Metabolomics,Bayesian,FunctionalPrediction,MultipleComparison,KEGG