Merge branch 'main' of https://github.com/KennthShang/PhaBOX

KennthShang · Dec 25, 2024 · 12431f1 · 12431f1
2 parents 8a6d59d + 5e8971a
commit 12431f1
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/.github/workflows/python-package-conda.yml b/.github/workflows/python-package-conda.yml
@@ -47,6 +47,8 @@ jobs:
         unzip phabox_db_v2.zip > /dev/null
         phabox2 --task end_to_end --contigs example_contigs.fa -o end_to_end -d phabox_db_v2
         head end_to_end/final_prediction/final_prediction_summary.tsv
+        phabox2 --task end_to_end --skip Y --contigs example_contigs.fa -o end_to_end2 -d phabox_db_v2
+        head end_to_end2/final_prediction/final_prediction_summary.tsv
         phabox2 --task phamer --contigs example_contigs.fa -o phamer -d phabox_db_v2
         head phamer/final_prediction/phamer_prediction.tsv
         phabox2 --task phagcn --contigs example_contigs.fa -o phagcn -d phabox_db_v2