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Update README.md
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KennthShang authored Oct 24, 2024
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Expand Up @@ -28,19 +28,20 @@ PhaBOX has now been upgraded to the 2.0 version!!! There are some major componen

🎉 Provide a more comprehensive taxonomy classification (latest ICTV 2024) and complete taxonomy lineage

🎉 Provide a genus-level clustering for potential new genus (genus-level vOTU)!
🎉 Provide a genus-level clustering for potential new genera (genus-level vOTU)!

🎉 Provide a protein annotation function!

🎉 Provide a contamination and prophage detection module!

🎉 More user-friendly commands!
🎉 Allowing to predict host using bacterial MAGs

🎉 Provide a vOTU grouping module

The web server is still upgrading; please be patient
🎉 Provide a marker-searching module for the phylogenetic tree

🎉 More user-friendly commands!

The following functions will be coming soon!
1. Provide a marker-searching module for the phylogenetic tree
2. Allowing the use of the host prediction function in a more flexible way (only use CRISPRs for prediction; MAGs' CRISPR detection, etc.). Currently, if you want to predict the phage-bacteria interaction via CRISPR using **your own bacterial assemblies**, please try: [https://github.com/KennthShang/CHERRY_crispr_MAG](https://github.com/KennthShang/CHERRY_crispr_MAG)

If you have further suggestions, feel free to let me know! You can post an issue or directly email me (jiayushang@cuhk.edu.hk). We welcome any suggestions.

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