Enhanced results, animation and graph for CMBBE2024 #142
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Run the tests | |
| on: [pull_request] | |
| env: | |
| PREFIX_WINDOWS: C:\Miniconda3\envs\cocofest | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [windows-latest] | |
| shard: [1, 2] | |
| name: Tests on ${{ matrix.os }}-shard ${{ matrix.shard }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Set prefix windows | |
| run: | | |
| echo "PREFIX=${{ env.PREFIX_WINDOWS }}" >> $GITHUB_ENV | |
| if: matrix.os == 'windows-latest' | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Setup environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| activate-environment: cocofest | |
| environment-file: environment.yml | |
| - name: Print mamba info | |
| run: | | |
| mamba info | |
| mamba list | |
| - name: Install bioptim on Windows | |
| run: | | |
| pwd | |
| cd external | |
| ./bioptim_install_windows.sh 4 ${{ env.PREFIX_WINDOWS }} | |
| cd .. | |
| - name: Install extra dependencies | |
| run: mamba install pytest-cov black pytest pytest-cov codecov packaging -cconda-forge | |
| - name: Run tests with code coverage | |
| run: pytest -v --color=yes --cov-report term-missing --cov=cocofest --cov-report=xml:coverage.xml tests/shard${{ matrix.shard }} | |
| - name: Archive coverage report | |
| id: archive | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage${{ matrix.shard }} | |
| path: | | |
| coverage.xml | |
| .coverage | |
| merge-coverage: | |
| needs: build | |
| runs-on: windows-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Set prefix windows | |
| run: | | |
| echo "PREFIX=${{ env.PREFIX_WINDOWS }}" >> $GITHUB_ENV | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Setup environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| activate-environment: cocofest | |
| environment-file: environment.yml | |
| - name: Print mamba info | |
| run: | | |
| mamba info | |
| - name: Install bioptim on Windows | |
| run: | | |
| pwd | |
| cd external | |
| ./bioptim_install_windows.sh 4 ${{ env.PREFIX_WINDOWS }} | |
| cd .. | |
| - name: Install extra dependencies | |
| run: pip install coverage | |
| - name: Download all workflow run artifacts | |
| id: download | |
| uses: actions/download-artifact@v3 | |
| - name: Rename coverage files | |
| run: | | |
| for shard in {1,2}; do | |
| mv coverage${shard}/coverage.xml coverage${shard}.xml | |
| mv coverage${shard}/.coverage* .coverage${shard} | |
| done | |
| - name: Show current dir content | |
| run: pwd; ls -a -l | |
| - name: Merge coverage reports | |
| run: coverage combine .coverage1 .coverage2 | |
| - name: Show current dir content with new .coverage file | |
| run: pwd; ls -a | |
| - name: Generate XML report | |
| run: | | |
| coverage xml | |
| coverage report -m | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| #token: ${{ secrets.CODECOV_TOKEN }} | |
| file: ./coverage.xml | |
| #files: ./coverage1.xml, ./coverage2.xml, ./coverage3.xml, ./coverage4.xml | |
| flags: unittests | |
| fail_ci_if_error: true | |
| verbose: true | |
| token: ${{ secrets.CODECOV_TOKEN }} |