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It may help to troubleshoot the issue by seeing the complete log file and the assembly graph (*fastg or visualized) |
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Hello,
My data is low coverage (<1x), and I have a number of assemblies that have the following error -
WARNING: The graph might suffer from contamination or polymorphism!
I am using the follow kmers [21,45,65,85,105]. I am wondering if there are other reasons I may get this error other than contmination? I have removed these individuals from subsequent popgen analyses and would like to include them, but would like a little more information about this error.
Thank you for your advise.
-josh
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