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Dear Sir,
I have run the get_organelle_from_reads.py command in Ubuntu terminal, but command can not run and throw some installing error.
This is an error
env1) user@user:~$ get_organelle_from_reads.py -1 S-alatum_R1.fastq.gz -2 S-alatum_R2.fastq.gz -o plastome_output -F embplant_pt -R 10
############################################################################
ERROR: default embplant_pt,embplant_mt database not added yet!
Install it by: get_organelle_config.py -a embplant_pt,embplant_mt
or
Install all types by: get_organelle_config.py -a all
Please help me to install embplant_mt and embplant_pt or all
i have tried so many times but failed to install, when i try to install show one more error i.e Bowtie2 is not available, but Bowtie2 is already exist.
Therefore, i requested to solve my problem as soon as possible.
Regards,
Mukesh Kumar
The text was updated successfully, but these errors were encountered:
Those who complained that they had bowtie2 but still got the Bowtie2 is not available error usually had not really tried running it. #85 and #102 are where you should read solutions and post follow-ups before opening this new issue.
I will close this issue unless your issue is different from available issues. In that case, please provide the following info:
Dear Sir,
I have run the get_organelle_from_reads.py command in Ubuntu terminal, but command can not run and throw some installing error.
This is an error
env1) user@user:~$ get_organelle_from_reads.py -1 S-alatum_R1.fastq.gz -2 S-alatum_R2.fastq.gz -o plastome_output -F embplant_pt -R 10
############################################################################
ERROR: default embplant_pt,embplant_mt database not added yet!
Install it by: get_organelle_config.py -a embplant_pt,embplant_mt
or
Install all types by: get_organelle_config.py -a all
Please help me to install embplant_mt and embplant_pt or all
i have tried so many times but failed to install, when i try to install show one more error i.e Bowtie2 is not available, but Bowtie2 is already exist.
Therefore, i requested to solve my problem as soon as possible.
Regards,
Mukesh Kumar
The text was updated successfully, but these errors were encountered: