Scallop v0.10.5

• improve assembling single-exon transcripts

Scallop-LR v0.9.2

• add the same alternative algorithm for LP in resolving unsplitable vertices as we did in the release of Scallop v0.10.4. (Both methods can preserve all the phasing paths, and experimental studies show that these two algorithms give very similar accuracy.) When this alternative algorithm is used, the Clp is not needed. The two options can be selected at the time of compiling.
• fix known bugs

Scallop v0.10.4

• An iterative algorithm has been added as an alternative for the LP formulation when decomposing unsplitable vertices. Both methods can preserve all the phasing paths, and experimental studies show that these two algorithms give very similar accuracy. When this alternative algorithm is used, the Clp is not needed. The two options can be selected at the time of compiling.
• Known bugs have been fixed.

Scallop v0.10.3

• binaries can directly run on systems with lower version of glibc (by not using c++11)
• add parameters for maximum number of CIGAR size
• fix known bugs

Scallop-LR v0.9.1

Scallop-LR is a transcript assembler for long-reads RNA-seq.

Scallop v0.10.2

• fix bugs
• rewrite configure

Scallop v0.10.1

• Add feature to automatically infer library-type.

Scallop v0.9.11

• fix bug when using htslib 1.5
• add merging single-exon transcripts for unstranded case

Scallop v0.9.10

• Update compiling options for htslib, so chat libbz2, liblzma, libcrypto, and libcurl are not necessary.
• Update compiling options for Clp, so that libbz2 is not necessary.

Scallop v0.9.9

• Add heuristics to filter false positive edges
• Add arguments checking
• Change default parameter of min-transcript-length