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raquellewei committed Oct 2, 2023
1 parent 2614f16 commit 347e72a
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion fununifrac/reproducibility/plot_mds.py
Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@ def parsearg():
labels = [l.strip() for l in labels]
labels = [Path(l).stem for l in labels]
labels = [l.replace("sourmash_gather_out_scale1000_k_11_", "") for l in labels]
print(metadata)
print(labels)
metadata_dict = {x:y for (x, y) in zip(metadata[args.sample_id], metadata[args.condition])}
pw_dist = np.load(args.pairwise_distance)
mds = MDS(dissimilarity='precomputed')
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