From 77d4bfabbf4abe5e1af385c427155206661681b0 Mon Sep 17 00:00:00 2001 From: raquellewei Date: Tue, 3 Oct 2023 08:36:12 -0400 Subject: [PATCH] add script --- fununifrac/reproducibility/assign_branch_lengths.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/fununifrac/reproducibility/assign_branch_lengths.sh b/fununifrac/reproducibility/assign_branch_lengths.sh index 47574f7..daceb05 100644 --- a/fununifrac/reproducibility/assign_branch_lengths.sh +++ b/fununifrac/reproducibility/assign_branch_lengths.sh @@ -16,4 +16,4 @@ rand_output="data/kegg_trees/kegg_ko00001_randomized_method.txt" #randomized method #python ../create_edge_matrix.py -e $kegg_tree_no_lengths -d $ko_dm_file -o $out_dir -b ko00001 -python ../create_edges.py -d "../../fununifrac/reproducibility/"$ko_dm_file -e "d../../fununifrac/reproducibility/$kegg_tree_no_lengths" "../../fununifrac/reproducibility/$A_matrix" -b ko00001 -o "../../fununifrac/reproducibility/data/$rand_output" --force --distance +python ../compute_edges.py -d "../../fununifrac/reproducibility/"$ko_dm_file -e "d../../fununifrac/reproducibility/$kegg_tree_no_lengths" "../../fununifrac/reproducibility/$A_matrix" -b ko00001 -o "../../fununifrac/reproducibility/data/$rand_output" --force --distance