debug

KoslickiLab · Oct 2, 2023 · 9b6a636 · 9b6a636
1 parent 7ff9394
commit 9b6a636
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/fununifrac/reproducibility/plot_mds.py b/fununifrac/reproducibility/plot_mds.py
@@ -30,6 +30,7 @@ def parsearg():
         labels = [l.strip() for l in labels]
     labels = [Path(l).stem for l in labels]
     labels = [l.replace("sourmash_gather_out_scale1000_k_11_", "") for l in labels]
+    print(metadata.columns)
     metadata_dict = {x:y for (x, y) in zip(metadata[args.sample_id], metadata[args.condition])}
     pw_dist = np.load(args.pairwise_distance)
     mds = MDS(dissimilarity='precomputed')