From 9b6a63629b69a54f99e3afaf437a320e77aba670 Mon Sep 17 00:00:00 2001 From: raquellewei Date: Mon, 2 Oct 2023 12:44:18 -0400 Subject: [PATCH] debug --- fununifrac/reproducibility/plot_mds.py | 1 + 1 file changed, 1 insertion(+) diff --git a/fununifrac/reproducibility/plot_mds.py b/fununifrac/reproducibility/plot_mds.py index f03e1fb..9eb707d 100644 --- a/fununifrac/reproducibility/plot_mds.py +++ b/fununifrac/reproducibility/plot_mds.py @@ -30,6 +30,7 @@ def parsearg(): labels = [l.strip() for l in labels] labels = [Path(l).stem for l in labels] labels = [l.replace("sourmash_gather_out_scale1000_k_11_", "") for l in labels] + print(metadata.columns) metadata_dict = {x:y for (x, y) in zip(metadata[args.sample_id], metadata[args.condition])} pw_dist = np.load(args.pairwise_distance) mds = MDS(dissimilarity='precomputed')