adding some new data

KoslickiLab · Oct 5, 2023 · adb85c2 · adb85c2
1 parent a0e141c
commit adb85c2
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Showing 6 changed files with 3,513 additions and 9 deletions.
diff --git a/fununifrac/reproducibility/Kegg_tree.py b/fununifrac/reproducibility/Kegg_tree.py
@@ -520,7 +520,7 @@ def visualize_diff(edge_list_inferred, edge_list_actual, outfile_name):
     df['inferred_length'] = inferred_df['edge_length']
     print(df)
     sns.scatterplot(data=df, x='inferred_length', y='actual_length')
-    #plt.show()
+    plt.show()
     plt.savefig(outfile_name)
     return
 

diff --git a/fununifrac/reproducibility/branch_length_assignment_time_compare.py b/fununifrac/reproducibility/branch_length_assignment_time_compare.py
@@ -52,7 +52,7 @@
         data_dict["Size"].append(d_size)
         data_dict["Method"].append('Randomized')
         if not os.path.isfile(f"{MY_PATH}/{A_matrix_file}"):
-            os.system(f'python ../graph_to_path_matrix.py -e {ko_edge_list_no_edge_lengths} -d {ko_dm_file} -o data'
+            os.system(f'python ../create_edge_matrix.py -e {ko_edge_list_no_edge_lengths} -d {ko_dm_file} -o data'
                   f' -b ko00001')
         start_time = time.time()
         os.system(f'python ../create_edge_lengths.py -d {MY_PATH}/{ko_dm_file} -e {MY_PATH}/{ko_edge_list_no_edge_lengths} '