modify arguments

KoslickiLab · Oct 3, 2023 · da68948 · da68948
1 parent e9032f2
commit da68948
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/fununifrac/reproducibility/assign_branch_lengths.sh b/fununifrac/reproducibility/assign_branch_lengths.sh
@@ -16,4 +16,4 @@ rand_output="data/kegg_trees/kegg_ko00001_randomized_method.txt"
 
 #randomized method
 #python ../create_edge_matrix.py -e $kegg_tree_no_lengths -d $ko_dm_file -o $out_dir -b ko00001
-python ../compute_edges.py -d "../../fununifrac/reproducibility/"$ko_dm_file -e "d../../fununifrac/reproducibility/$kegg_tree_no_lengths" -b ko00001 -o "../../fununifrac/reproducibility/data/$rand_output" --force --distance
+python ../compute_edges.py -d "../../fununifrac/reproducibility/"$ko_dm_file -e "d../../fununifrac/reproducibility/$kegg_tree_no_lengths" -b ko00001 -o "../../fununifrac/reproducibility/data/$rand_output" --distance