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Krebslabrep

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  1. Kreibich_2023_5mC_at_enhancers Kreibich_2023_5mC_at_enhancers Public

    Analysis of Single Molecule Footprinting (SMF) data for the analysis of DNA methylation, chromatin accessibility and TF binding. The repository contains all primary code to reproduce the main analy…

    R 4

  2. Soenmezer_2020_SMF Soenmezer_2020_SMF Public

    Basic functions for single molecule TF analysis

    R 3

  3. SingleMoleculeFootprinting SingleMoleculeFootprinting Public

    R package for SMF data analysis

    R 2 6

  4. SingleMoleculeFootprintingData SingleMoleculeFootprintingData Public

    R 1

  5. Predoc_2022 Predoc_2022 Public

    Datasets for predoc course

    HTML

  6. bonito bonito Public

    Forked from nanoporetech/bonito

    A PyTorch Basecaller for Oxford Nanopore Reads

    Python

Repositories

Showing 8 of 8 repositories
  • TF-chromatin Public
    Krebslabrep/TF-chromatin’s past year of commit activity
    R 0 0 0 0 Updated Oct 7, 2024
  • SingleMoleculeFootprinting Public

    R package for SMF data analysis

    Krebslabrep/SingleMoleculeFootprinting’s past year of commit activity
    R 2 6 2 1 Updated Oct 7, 2024
  • Chatsirisupachai_Moene_2024 Public
    Krebslabrep/Chatsirisupachai_Moene_2024’s past year of commit activity
    R 0 0 0 0 Updated Sep 24, 2024
  • bonito Public Forked from nanoporetech/bonito

    A PyTorch Basecaller for Oxford Nanopore Reads

    Krebslabrep/bonito’s past year of commit activity
    Python 0 124 0 0 Updated Mar 12, 2024
  • Kreibich_2023_5mC_at_enhancers Public

    Analysis of Single Molecule Footprinting (SMF) data for the analysis of DNA methylation, chromatin accessibility and TF binding. The repository contains all primary code to reproduce the main analyses for the publication "Single molecule footprinting identifies context-dependent regulation of enhancers by DNA methylation" (Kreibich et al., 2023)

    Krebslabrep/Kreibich_2023_5mC_at_enhancers’s past year of commit activity
    R 4 GPL-3.0 0 0 0 Updated Feb 29, 2024
  • Predoc_2022 Public

    Datasets for predoc course

    Krebslabrep/Predoc_2022’s past year of commit activity
    HTML 0 0 0 0 Updated Oct 27, 2023
  • SingleMoleculeFootprintingData Public
    Krebslabrep/SingleMoleculeFootprintingData’s past year of commit activity
    R 0 GPL-3.0 1 0 0 Updated Apr 7, 2021
  • Soenmezer_2020_SMF Public

    Basic functions for single molecule TF analysis

    Krebslabrep/Soenmezer_2020_SMF’s past year of commit activity
    R 3 GPL-3.0 0 0 0 Updated Sep 9, 2020

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