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21 Open 4 Closed
21 Open 4 Closed
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Issues list

Flowcytometer regating
#25 opened Jul 20, 2023 by rkrug
6 tasks
@rkrug
Fix biomass calculation for LEEF 2
#24 opened Jul 13, 2023 by rkrug
@rkrug
Include certain values to check for in params of verification LEEF-2 Reclassification_and_Data_Cleaning - Verification.qmd
#23 opened Jul 13, 2023 by rkrug
2 of 4 tasks
@rkrug @duriah
7
Implement renaming before saving to parquet files
#22 opened Jul 13, 2023 by rkrug
@rkrug
Additional check of other cleaning steps implemented, if necessary (e.g. water chemistry trend removal)
#19 opened Jul 13, 2023 by rkrug
@rkrug
Check that density = 0 and biomass = 0 for classes that could be present but are not.
#18 opened Jul 13, 2023 by rkrug
@rkrug
All removed time series and videos are correctly removed from all tables.
#17 opened Jul 13, 2023 by rkrug
@rkrug
All sampling methods present
#16 opened Jul 13, 2023 by rkrug
@rkrug
All wanted sampling days present, all undesired sampling days not present (e.g. test sampling days). If NA or completely missing then we know why and make a not in the checks.Issue Title
#15 opened Jul 13, 2023 by rkrug
@rkrug @duriah
All wanted variables (species and other things measured) present, all undesired variables not present. To check: density, biomasses, water chemistry, oxygen, salinity.Issue Title
#14 opened Jul 13, 2023 by rkrug
@rkrug @duriah @romanalimb
Check that all data is present and that all missing data (NA or completely missing) is accounted for.Issue Title
#13 opened Jul 13, 2023 by rkrug
@rkrug
Update R script for LEEF2 species. Is it necessary to update bacteria size?Issue Title
#12 opened Jul 13, 2023 by rkrug
@rkrug
Calculation of biomassesIssue Title
#11 opened Jul 13, 2023 by rkrug
@rkrug
Further changes/checks with flowcytometry data (as done in LEEF1 and which I don’t know specifics)Issue Title
#10 opened Jul 13, 2023 by rkrug
@rkrug @duriah
Further investigations of the data to see whether something is wrong.Issue Title
#9 opened Jul 13, 2023 by rkrug
@duriah
Water chemistry: if a sampling order effect is present, then remove trend in the data caused by it.Issue Title
#8 opened Jul 13, 2023 by rkrug
@rkrug
Concordance between visual observations during the experiment (i.e. manual checks) and recorded time series: assessment of classification and exclusion of time series that are likely just noise.Issue Title
#6 opened Jul 13, 2023 by rkrug
@rkrug
Adding density = 0 and biomass = 0 for classes that could be present but are notIssue Title
#5 opened Jul 13, 2023 by rkrug
@rkrug
Manual assessment of video quality (percentage of videos removed). Manually (by looking at a certain number of random videos – I suggest to look at fewer than last time) and by investigating videos with a high number of debris tracked.Issue Title
#4 opened Jul 13, 2023 by rkrug
@rkrug
Removal of time series not of interest (e.g. ciliates tracked with the flowcam, or "HNA", "LNA" and "MNA" in the flowcytometer)
#3 opened Jul 13, 2023 by rkrug
@rkrug
RRD LEEF-2 dumping box - will be splitter into individual issues
#2 opened Jul 13, 2023 by rkrug
21 of 25 tasks
@rkrug
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