CHANGELOG.md

Changelog for the generic MIP platform

4.0.0 - 2019-06-18

• Improved Frontend
• Several new federated algorithms
• Federated histograms on EE page
• Connection to the Galaxy workflow engine
• Multiple pathologies PoC

Main components upgrade:

• portal_frontend_version: "4.0"
• portal_backend_version: "4.0"

Compatibility with Exareme: v20.2

3.0.0 - 2019-05-17

Main upgrades:

• portal_frontend_version: "3.0.2"
• portal_backend_version: "3.0.0"
• woken_version: "3.0.2"

2.5.0 - 2017-11-08 - Glasgow release

Release highlights:

• Modular deployment of MIP building blocks customised for hospitals (aka 'MIP Local')

Deploys:

• Microservices infrastructure 1.5
• Web Analytics 2.0
  • Portal Backend 2.3.13
  • Portal Frontend 2.3.2
  • Portal database
• Algorithm Factory 2.0
  • Woken 2.0.3
  • Woken cross-validation
  • Woken database
  • Chronos 2.5
• Algorithm Library 1.0
  • Histograms 0.3.1
  • Statistics Summary
  • Linear Regression 0.0.2 (reimplementation in Python)
  • Anova 0.3.1
  • KNN 0.2.1
  • Naive Bayes 0.2.0
• Data Factory 1.0
  • Airflow 1.8.2
  • Airflow Imaging plugins 2.4.1
  • Airflow DAGs for Data Factory 0.9.5
  • Matlab 2016b
  • SPM 12
  • MRI preprocessing pipeline 1.3.0
  • MRI Hierarchizer 1.3.4
  • Data Tracking 1.7.1
  • Data Catalog database 1.6.0
  • I2B2 Import 1.6.3
  • EHR data to I2B2 0.2.0
• Hospital Database 1.0
  • PostgresRAW, PostgresRAW-ui
  • MIPMap

Changes:

• Demo of Algorithm Factory + Web Analytics using Vagrant
• Integration tests for the installation of the whole platform
• Configuration scripts to guide the initial configuration of the platform
• Simplified configuration organised around building blocks
• Improve audit: use etckeeper to keep track of installations on a machine
• Data Factory improvements: use I2B2 'capture' and I2B2 'CDE' databases to capture and normalise respectively data from the hospitals and store it into an I2B2-compatible format.
• Automated installation of pre-processed data extracted from research datasets

2.0.0 - 2017-03-31 - SGA1 M12

Release highlights:

• First release of Data Factory for the automated processing of hospital and research data. The Data Factory includes a worflow engine and several pre-defined pipelines highly adaptable to the type of MRI scans and EHR data encountered in hospitals, memory clinics and also in research repositories.

Deploys:

• Microservices infrastructure 1.5
  • Mesos
  • Marathon
  • Zookeeper
• Web Analytics 2.0
  • Portal Backend
  • Portal Frontend
  • Portal database
• Algorithm Factory 2.0
  • Woken 2.0.0
  • Woken database 1.0.0
  • Chronos
• Algorithm Library 1.0
  • Histograms
  • Statistics Summary
  • Linear Regression
  • Anova
  • KNN
  • Naive Bayes
• Data Factory 1.0
  • Airflow 1.7.1
  • Airflow Imaging plugins 2.2.4
  • Airflow DAGs for Data Factory 0.8.15
  • Matlab 2016b
  • SPM 12
  • MRI preprocessing pipeline 1.2.6
  • MRI Hierarchizer 1.2.0
  • Data Tracking 1.5.4
  • Data Catalog database 1.4.5
  • I2B2 Import 1.5.4
• Hospital Database 1.0
  • PostgresRAW
  • PostgresRAW-ui
  • MIPMap

Manual installations:

• WebMIPMap
• Exareme

Changes:

• Demo of Algorithm Factory (Woken + Chronos + databases) using Vagrant
• Demo of PostgresRAW and its UI using Vagrant
• Deploy several databases onto the same Postgres server to save memory.
• Add new building block 'Data Factory'
• Track provenance information in Data Factory
• Renamed organisation on Github, from HBPSP8Repo to HBPMedical

1.5.0 - 2016-10-07 - SGA1 M06 - Florence release

Deploys:

• Microservices infrastructure 1.5
• Portal backend 1.0, Portal Frontend 1.0
• Woken 1.0

Manual installations:

• PostgresRAW, PostgresRAW-ui
• MIPMap, WebMIPMap
• Exareme

Changes:

• Automate deployment of development tools (Gitlab, Sonarcube, Jenkins)
• Deploy a private Docker Registry
• Upgrade Mesos, Marathon, Docker to keep up with new functionalities
• Rename Workflow to Woken
• Setup etckeeper to keep track of configuration changes on all systems
• Work started on CBrain integration
• Full automated installation of Woken, Chronos, Web portal backend and frontend, all databases
• Apply database migrations from Docker to setup and upgrade all databases
• Setup Marathon health checks on all services

1.0.0 - 2016-03-22 - End of RUP

Deploys:

• Microservices infrastructure 1.0
• Portal Backend 0.1
• Workflow (Woken) 0.1

Manual installations:

• RAW
• MIPMap
• Exareme

Changes:

• Install Workflow app (Woken), Frontend and Portal Backend
• Install Nginx, Letsencrypt, Failtoban
• Deployment inside Vagrant
• Deployment over a cluster of machines

0.1 - 2015-12-19

• Install Mesos, Marathon, Zookeeper, Docker

0.0.0 - 2015-09-03

• Start of this project aiming for an automated installation of a microservice platform and its services.