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NanoTiming

Laurent Lacroix (laurent.lacroix@inserm.fr)

About this repository

This repository contains the scripts used for all the analysis in the NanoTiming manuscript Theulot et al., 2024. Raw data are available from ENA repository under accession number PRJEB76824.
Large files are available from the Zenodo repository under the DOI 10.5281/zenodo.12668295

  • Instructions, scripts and model used to base call BrdU in nanopore reads are in the folder BrdU_Basecalling.
  • Reference genome sequences and annotations are in the folder Reference_Genome.
  • Instructions and scripts used to compute the replication timing from the processed reads are in the folder NanoTiming_Processing.
  • Scripts and data used to produce most of the figures of the cited manuscript are in the folder Figures_Article.